gatk-3.8/public/java/test/org/broadinstitute/sting/utils/ProcessUtilsUnitTest.java

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2013-02-09 23:13:01 +08:00
/*
* Copyright (c) 2012 The Broad Institute
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
*
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR
* THE USE OR OTHER DEALINGS IN THE SOFTWARE.
*/
package org.broadinstitute.sting.utils;
// the imports for unit testing.
import org.broadinstitute.sting.BaseTest;
import org.broadinstitute.sting.utils.exceptions.ReviewedStingException;
import org.testng.Assert;
import org.testng.annotations.Test;
public class ProcessUtilsUnitTest extends BaseTest {
@Test()
public void testGoodCommand() {
final String goodLs = "ls " + b37KGReference;
final int result = ProcessUtils.runCommandAndWait(goodLs);
Assert.assertEquals(result, 0, "ProcessUtils tells me that my command that should be good failed");
}
@Test()
public void testGoodCommandWithBadArguments() {
final String goodLs = "ls asdfhadsfhakdhsfakdhfalkdhfalkdhflakhdflakdhsf";
final int result = ProcessUtils.runCommandAndWait(goodLs);
Assert.assertFalse(result == 0, "ProcessUtils tells me that my command which had a bad argument and should have returned not zero, did in fact return properly");
}
@Test(expectedExceptions = ReviewedStingException.class)
public void testBadCommand() {
final String goodLs = "asfdadsfadsfa " + b37KGReference;
final int result = ProcessUtils.runCommandAndWait(goodLs);
Assert.fail("ProcessUtils should have excepted out but got result back of " + result);
}
}