21 lines
1.1 KiB
XML
21 lines
1.1 KiB
XML
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<?xml version="1.0" encoding="UTF-8"?>
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<package>
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<name>LocalRealignmentAroundIndels</name>
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<executable>
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<name>LocalRealignmentAroundIndels</name>
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<main-class>org.broadinstitute.sting.gatk.CommandLineGATK</main-class>
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<properties>StingText.properties</properties>
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<dependencies>
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<!-- Local realignment around indels -->
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<class>org.broadinstitute.sting.gatk.walkers.indels.CleanedReadInjector</class>
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<class>org.broadinstitute.sting.gatk.walkers.indels.IndelIntervalWalker</class>
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<class>org.broadinstitute.sting.gatk.walkers.indels.IntervalCleanerWalker</class>
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<class>org.broadinstitute.sting.gatk.walkers.indels.IntervalMergerWalker</class>
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<class>org.broadinstitute.sting.gatk.walkers.indels.MismatchIntervalWalker</class>
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<class>org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker</class>
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<class>org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperWalker</class>
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<class>org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperV2Walker</class>
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</dependencies>
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</executable>
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</package>
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