32 lines
686 B
Java
32 lines
686 B
Java
|
package org.broadinstitute.sting.utils;
|
||
|
|
|
||
|
|
public class BaseUtils {
|
||
|
|
static public int simpleBaseToBaseIndex(char base) {
|
||
|
|
switch (base) {
|
||
|
|
case 'A':
|
||
|
|
case 'a': return 0;
|
||
|
|
|
||
|
|
case 'C':
|
||
|
|
case 'c': return 1;
|
||
|
|
|
||
|
|
case 'G':
|
||
|
|
case 'g': return 2;
|
||
|
|
|
||
|
|
case 'T':
|
||
|
|
case 't': return 3;
|
||
|
|
|
||
|
|
default: return -1;
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
static public char baseIndexToSimpleBase(int baseIndex) {
|
||
|
|
switch (baseIndex) {
|
||
|
|
case 0: return 'A';
|
||
|
|
case 1: return 'C';
|
||
|
|
case 2: return 'G';
|
||
|
|
case 3: return 'T';
|
||
|
|
default: return '.';
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|