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gatk-3.8/scripts/buildRODs.sh

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Fix for inaccurate and misleading timing information, now only prints estimated time to completion when the location flag isn't set git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@25 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-10 22:59:42 +08:00
java -Xmx40000m -cp out/production/AnalysisTK:trunk/java/jars/functionalj.jar edu.mit.broad.sting.atk.PrepareROD REF_FILE_ARG=/seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta ROD_FILE=/seq/references/dbsnp/downloads/snp129_hg18.txt OUT=`echo $1/snp129_hg18.txt.rod` ROD_TYPE=dbSNP ROD_NAME=dbSNP