18 lines
432 B
Scala
18 lines
432 B
Scala
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package org.broadinstitute.sting.queue.function
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/**
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* Defines a command line function that runs java code.
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*/
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trait JavaCommandLineFunction extends CommandLineFunction {
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/**
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* Returns the java executable to run.
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*/
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def javaExecutable: String
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def javaOpts = "%s -Djava.io.tmpdir=%s"
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.format(optional(" -Xmx", memoryLimit, "g"), jobTempDir)
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def commandLine = "java%s %s"
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.format(javaOpts, javaExecutable)
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}
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