gatk-3.8/c/bwa/build_mac.sh

#!/bin/sh
export BWA_HOME="/Users/mhanna/src/bwa"
export JAVA_INCLUDE="/System/Library/Frameworks/JavaVM.framework/Headers"
export TARGET_LIB="libbwa.dylib"
export EXTRA_LIBS="-lc -lz -lsupc++"
export LIBTOOL_COMMAND="libtool -dynamic"
make
More preparation for bwa patch: create a crude, minimal build system to build against a static library that the bwa compile (now) generates. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1980 348d0f76-0448-11de-a6fe-93d51630548a 2009-11-07 02:41:01 +08:00			`#!/bin/sh`
BWA/C changes have arrived in svn repository. Remove temporary storage from Sting repository. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2019 348d0f76-0448-11de-a6fe-93d51630548a 2009-11-12 00:48:21 +08:00			`export BWA_HOME="/Users/mhanna/src/bwa"`
More preparation for bwa patch: create a crude, minimal build system to build against a static library that the bwa compile (now) generates. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1980 348d0f76-0448-11de-a6fe-93d51630548a 2009-11-07 02:41:01 +08:00			`export JAVA_INCLUDE="/System/Library/Frameworks/JavaVM.framework/Headers"`
			`export TARGET_LIB="libbwa.dylib"`
			`export EXTRA_LIBS="-lc -lz -lsupc++"`
			`export LIBTOOL_COMMAND="libtool -dynamic"`
			`make`