zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/doc/Genome Analysis TK plan.omn.../contents.xml

2595 lines
57 KiB
XML
Raw Normal View History

Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
<plist version="1.0">
<dict>
<key>baseStyle</key>
<dict>
<key>font-family</key>
<string>Lucida Grande</string>
</dict>
<key>columnTitleStyle</key>
<dict>
<key>font-size</key>
<real>13</real>
<key>font-weight</key>
<integer>9</integer>
<key>paragraph-alignment</key>
<string>center</string>
</dict>
<key>cost</key>
<real>0.0</real>
<key>currencyStyle</key>
<string>$1,234.56</string>
<key>displayDates</key>
<true/>
<key>displayProperties</key>
<array>
<dict>
<key>GanttGroupShading</key>
<false/>
<key>GanttVisibleRect</key>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<string>{{1132, 0}, {1025, 950}}</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>OutlineVisibleRect</key>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<string>{{0, 0}, {789, 950}}</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>ScaleWidths</key>
<dict>
<key>Automatic</key>
<real>100</real>
<key>Day</key>
<real>405</real>
<key>Hour</key>
<real>21960</real>
<key>Minute</key>
<real>21600</real>
<key>Month</key>
<real>11.5</real>
<key>Quarter</key>
<real>3.2000000476837158</real>
<key>Week</key>
<real>54</real>
<key>Year</key>
<real>0.78749996423721313</real>
</dict>
<key>SelectedPlanView</key>
<integer>1</integer>
<key>SelectedScale</key>
<string>Week</string>
<key>SelectedView</key>
<integer>0</integer>
<key>SheetSettings</key>
<dict>
<key>LevelConstrainsCompletionDate</key>
<false/>
<key>LevelUpdatesSelectedTasks</key>
<false/>
<key>RescheduleUpdatesSelectedTasks</key>
<false/>
</dict>
<key>ShouldDrawFolded</key>
<true/>
<key>ShowConstraints</key>
<true/>
<key>ShowCriticalPath</key>
<false/>
<key>ShowDependencyLines</key>
<true/>
<key>ShowGanttTimeOff</key>
<false/>
<key>activeColumnIdentifiers</key>
<array>
<string>Violations</string>
<string>Notes</string>
<string>Title</string>
<string>Effort</string>
<string>%Done</string>
</array>
<key>calendarController</key>
<dict>
<key>OutlineVisibleRect</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<string>{{0, 0}, {571, 747}}</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>activeColumnIdentifiers</key>
<array>
<string>IM</string>
<string>Notes</string>
<string>Type</string>
<string>Resource</string>
<string>Custom Work Week</string>
<string>Schedule Exception</string>
</array>
<key>columnWidths</key>
<dict>
<key>IM</key>
<real>20</real>
<key>Notes</key>
<real>20</real>
<key>Resource</key>
Slight improvements to allele caller interface; fixed problem with printing progress git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@260 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-03 00:44:12 +08:00
<real>436</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>Type</key>
<real>48</real>
</dict>
</dict>
<key>calendarSplit</key>
Slight improvements to allele caller interface; fixed problem with printing progress git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@260 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-03 00:44:12 +08:00
<real>0.67960631847381592</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>columnWidths</key>
<dict>
<key>Effort</key>
<real>70</real>
<key>Notes</key>
<real>20</real>
<key>Title</key>
<real>580</real>
<key>Violations</key>
<real>20</real>
</dict>
<key>dayWidth</key>
<real>54</real>
<key>resourceSplit</key>
Slight improvements to allele caller interface; fixed problem with printing progress git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@260 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-03 00:44:12 +08:00
<real>0.56752324104309082</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>resourcesController</key>
<dict>
<key>DayWidth</key>
<real>25</real>
<key>OutlineVisibleRect</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<string>{{0, 0}, {776, 950}}</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>ScaleWidths</key>
<dict>
<key>Automatic</key>
<real>25</real>
<key>Day</key>
<real>405</real>
<key>Hour</key>
<real>21960</real>
<key>Minute</key>
<real>21600</real>
<key>Month</key>
<real>11.5</real>
<key>Quarter</key>
<real>3.2000000476837158</real>
<key>Week</key>
<real>54</real>
<key>Year</key>
<real>0.78749996423721313</real>
</dict>
<key>SelectedScale</key>
<string>Automatic</string>
<key>TimelineVisibleRect</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<string>{{-1467, 0}, {995, 950}}</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>activeColumnIdentifiers</key>
<array>
<string>IM</string>
<string>Notes</string>
<string>Type</string>
<string>Resource</string>
<string>#</string>
</array>
<key>columnWidths</key>
<dict>
<key>#</key>
<real>75</real>
<key>IM</key>
<real>20</real>
<key>Notes</key>
<real>20</real>
<key>Resource</key>
Slight improvements to allele caller interface; fixed problem with printing progress git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@260 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-03 00:44:12 +08:00
<real>591</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>Type</key>
<real>64</real>
</dict>
</dict>
<key>side</key>
Updated todo list git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@251 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-02 04:31:42 +08:00
<real>0.56861674785614014</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>window</key>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<string>{{48, 62}, {1838, 1087}}</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
</dict>
</array>
<key>displaySeconds</key>
<false/>
<key>displayStatusCompletion</key>
<true/>
<key>displayStatusCost</key>
<true/>
<key>displayStatusEndDate</key>
<true/>
<key>displayStatusStartDate</key>
<true/>
<key>displayStatusTitle</key>
<true/>
<key>displayTimes</key>
<true/>
<key>endDate</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<string>20090424 15:45</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>flatNumbering</key>
<false/>
<key>groupTaskStyle</key>
<dict>
<key>font-size</key>
<real>13</real>
<key>font-weight</key>
<integer>9</integer>
</dict>
<key>notEditableStyle</key>
<dict>
<key>font-fill</key>
<dict>
<key>w</key>
<string>0.334677</string>
</dict>
</dict>
<key>noteStyle</key>
<dict>
<key>font-family</key>
<string>Helvetica</string>
<key>font-fill</key>
<dict>
<key>w</key>
<string>0.334677</string>
</dict>
<key>font-italic</key>
<true/>
</dict>
<key>objectId</key>
<integer>0</integer>
<key>printInfo</key>
<dict>
<key>NSOrientation</key>
<integer>0</integer>
<key>NSPaperName</key>
<string>na-letter</string>
<key>NSPrinterName</key>
<string>dahl</string>
<key>NSScalingFactor</key>
<real>1</real>
<key>OPPrintSettingPrintDisplayOption</key>
<integer>0</integer>
<key>OPPrintSettingPrintOption</key>
<integer>0</integer>
</dict>
<key>projectUserKeys</key>
<array/>
<key>resourceDifferenceEngine</key>
<dict>
<key>nextId</key>
Updated todo list git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@251 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-02 04:31:42 +08:00
<integer>24</integer>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
</dict>
<key>resourceUserKeys</key>
<array/>
<key>resources</key>
<array>
<dict>
<key>available</key>
<real>5.9499998092651367</real>
<key>children</key>
<array>
<integer>1</integer>
<integer>5</integer>
<integer>10</integer>
<integer>14</integer>
<integer>16</integer>
</array>
<key>efficiency</key>
<real>0.59499996900558472</real>
<key>objectId</key>
<integer>-1</integer>
<key>type</key>
<integer>3</integer>
</dict>
<dict>
<key>available</key>
<real>2</real>
<key>children</key>
<array>
<integer>2</integer>
<integer>3</integer>
</array>
<key>name</key>
<string>Software Engineering team</string>
<key>objectId</key>
<integer>1</integer>
<key>type</key>
<integer>3</integer>
</dict>
<dict>
<key>name</key>
<string>Matthew Hanna</string>
<key>objectId</key>
<integer>2</integer>
</dict>
<dict>
<key>name</key>
<string>Aaron McKenna</string>
<key>objectId</key>
<integer>3</integer>
</dict>
<dict>
<key>children</key>
<array>
<integer>6</integer>
<integer>7</integer>
<integer>8</integer>
<integer>9</integer>
</array>
<key>efficiency</key>
<real>0.25</real>
<key>name</key>
<string>Computational Biologists</string>
<key>objectId</key>
<integer>5</integer>
<key>type</key>
<integer>3</integer>
</dict>
<dict>
<key>available</key>
<real>0.25</real>
<key>name</key>
<string>Kiran Garimella</string>
<key>objectId</key>
<integer>6</integer>
</dict>
<dict>
<key>available</key>
<real>0.25</real>
<key>name</key>
<string>Andrey Sivachenko</string>
<key>objectId</key>
<integer>7</integer>
</dict>
<dict>
<key>available</key>
<real>0.25</real>
<key>name</key>
<string>Andrew Kernytsky</string>
<key>objectId</key>
<integer>8</integer>
</dict>
<dict>
<key>available</key>
<real>0.25</real>
<key>name</key>
<string>Eric Banks</string>
<key>objectId</key>
<integer>9</integer>
</dict>
<dict>
<key>available</key>
<real>0.94999998807907104</real>
<key>children</key>
<array>
<integer>11</integer>
<integer>12</integer>
</array>
<key>efficiency</key>
<real>0.47499999403953552</real>
<key>name</key>
<string>Group leaders</string>
<key>objectId</key>
<integer>10</integer>
<key>type</key>
<integer>3</integer>
</dict>
<dict>
<key>available</key>
<real>0.75</real>
<key>name</key>
<string>Mark DePristo</string>
<key>objectId</key>
<integer>11</integer>
</dict>
<dict>
<key>available</key>
<real>0.19999998807907104</real>
<key>name</key>
<string>Jared Maguire</string>
<key>objectId</key>
<integer>12</integer>
</dict>
<dict>
<key>name</key>
<string>Production informatics team</string>
<key>objectId</key>
<integer>14</integer>
</dict>
<dict>
<key>name</key>
<string>MPG software engineering</string>
<key>objectId</key>
<integer>16</integer>
</dict>
</array>
<key>schedule</key>
<dict>
<key>friday</key>
<dict>
<key>spans</key>
<array>
<dict>
<key>endTime</key>
<real>43200</real>
<key>startTime</key>
<real>28800</real>
</dict>
<dict>
<key>endTime</key>
<real>61200</real>
<key>startTime</key>
<real>46800</real>
</dict>
</array>
</dict>
<key>monday</key>
<dict>
<key>spans</key>
<array>
<dict>
<key>endTime</key>
<real>43200</real>
<key>startTime</key>
<real>28800</real>
</dict>
<dict>
<key>endTime</key>
<real>61200</real>
<key>startTime</key>
<real>46800</real>
</dict>
</array>
</dict>
<key>saturday</key>
<dict/>
<key>sunday</key>
<dict/>
<key>thursday</key>
<dict>
<key>spans</key>
<array>
<dict>
<key>endTime</key>
<real>43200</real>
<key>startTime</key>
<real>28800</real>
</dict>
<dict>
<key>endTime</key>
<real>61200</real>
<key>startTime</key>
<real>46800</real>
</dict>
</array>
</dict>
<key>tuesday</key>
<dict>
<key>spans</key>
<array>
<dict>
<key>endTime</key>
<real>43200</real>
<key>startTime</key>
<real>28800</real>
</dict>
<dict>
<key>endTime</key>
<real>61200</real>
<key>startTime</key>
<real>46800</real>
</dict>
</array>
</dict>
<key>wednesday</key>
<dict>
<key>spans</key>
<array>
<dict>
<key>endTime</key>
<real>43200</real>
<key>startTime</key>
<real>28800</real>
</dict>
<dict>
<key>endTime</key>
<real>61200</real>
<key>startTime</key>
<real>46800</real>
</dict>
</array>
</dict>
</dict>
<key>scheduleGranularity</key>
<integer>0</integer>
<key>sharedFormatter</key>
<dict>
<key>displayDays</key>
<true/>
<key>displayHours</key>
<true/>
<key>displayMinutes</key>
<false/>
<key>displayMonths</key>
<false/>
<key>displaySeconds</key>
<false/>
<key>displayWeeks</key>
<true/>
<key>displayYears</key>
<false/>
<key>hoursPerDay</key>
<real>8</real>
<key>hoursPerMonth</key>
<real>160</real>
<key>hoursPerWeek</key>
<real>40</real>
<key>hoursPerYear</key>
<real>1920</real>
</dict>
<key>startDate</key>
<string>20090315 00:00</string>
<key>taskBarLabels</key>
<dict>
<key>Gantt View</key>
<dict>
<key>taskTypeGroup</key>
<dict>
<key>OPGanttLeftTextKey</key>
<string></string>
<key>OPGanttOverTextKey</key>
<string></string>
<key>OPGanttRightTextKey</key>
<string>Assigned</string>
</dict>
<key>taskTypeMilestone</key>
<dict>
<key>OPGanttLeftTextKey</key>
<string></string>
<key>OPGanttOverTextKey</key>
<string></string>
<key>OPGanttRightTextKey</key>
<string>Assigned</string>
</dict>
<key>taskTypeTask</key>
<dict>
<key>OPGanttLeftTextKey</key>
<string></string>
<key>OPGanttOverTextKey</key>
<string></string>
<key>OPGanttRightTextKey</key>
<string>Assigned</string>
</dict>
</dict>
<key>Timeline View</key>
<dict>
<key>taskTypeGroup</key>
<dict>
<key>OPGanttLeftTextKey</key>
<string>Title</string>
<key>OPGanttOverTextKey</key>
<string></string>
<key>OPGanttRightTextKey</key>
<string></string>
</dict>
<key>taskTypeMilestone</key>
<dict>
<key>OPGanttLeftTextKey</key>
<string>Title</string>
<key>OPGanttOverTextKey</key>
<string></string>
<key>OPGanttRightTextKey</key>
<string>Assigned</string>
</dict>
<key>taskTypeTask</key>
<dict>
<key>OPGanttLeftTextKey</key>
<string>Title</string>
<key>OPGanttOverTextKey</key>
<string></string>
<key>OPGanttRightTextKey</key>
<string></string>
</dict>
</dict>
</dict>
<key>taskDifferenceEngine</key>
<dict>
<key>nextId</key>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<integer>131</integer>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
</dict>
<key>taskUserKeys</key>
<array/>
<key>tasks</key>
<array>
<dict>
<key>children</key>
<array>
<integer>55</integer>
<integer>32</integer>
<integer>56</integer>
<integer>23</integer>
<integer>84</integer>
<integer>27</integer>
<integer>50</integer>
</array>
<key>objectId</key>
<integer>-1</integer>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>86400</real>
<key>effort</key>
<real>86400</real>
<key>effortDone</key>
<real>86400</real>
<key>objectId</key>
<integer>1</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
<string>Select canonical build system, with eye for easy construction of publically available library and software tools</string>
<key>workDone</key>
<real>24</real>
<key>workSeconds</key>
<real>86400</real>
<key>workTime</key>
<real>24</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>28800</real>
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
<real>28800</real>
<key>objectId</key>
<integer>3</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>1</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
<string>Documentation on how to configure and develop in environment</string>
<key>workDone</key>
<real>8</real>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>52</integer>
<integer>53</integer>
</array>
<key>objectId</key>
<integer>5</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
<string>Extensible command line argument system</string>
</dict>
<dict>
<key>effort</key>
<real>14400</real>
<key>objectId</key>
<integer>6</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.898039</string>
<key>g</key>
<string>0.792157</string>
<key>r</key>
<string>0.219608</string>
</dict>
</dict>
<key>task</key>
<string>ByLoci traversal -- need flag to include all reference loci, not just those covered by reads</string>
<key>workSeconds</key>
<real>14400</real>
<key>workTime</key>
<real>4</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>57600</real>
<key>effort</key>
<real>57600</real>
<key>effortDone</key>
<real>57600</real>
<key>objectId</key>
<integer>7</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
<string>Indexing of BAM files -- access BAM index file and support jumping around</string>
<key>workDone</key>
<real>16</real>
<key>workSeconds</key>
<real>57600</real>
<key>workTime</key>
<real>16</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>8</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.907362</string>
<key>g</key>
<string>0.615564</string>
<key>r</key>
<string>0.437675</string>
</dict>
</dict>
<key>task</key>
<string>Develop algorithm for indexing of reference ordered data</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>98</integer>
<integer>97</integer>
</array>
<key>forcedStart</key>
<string>20090331080000</string>
<key>objectId</key>
<integer>9</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.898039</string>
<key>g</key>
<string>0.792157</string>
<key>r</key>
<string>0.219608</string>
</dict>
</dict>
<key>task</key>
<string>ByReference traversal</string>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>11</integer>
<key>units</key>
<real>0.25</real>
</dict>
</array>
<key>doneSeconds</key>
<real>28800</real>
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
<real>7200</real>
<key>objectId</key>
<integer>10</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
Updated todo list git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@251 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-02 04:31:42 +08:00
<string>Handle argument type checking -- throw errors for bad types -- handle problem with providing arguments to flag causing problems everywhere</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workDone</key>
<real>8</real>
<key>workSeconds</key>
<real>115200</real>
<key>workTime</key>
<real>32</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>11</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
<string>Improve performance of BAM reader, BinaryCodec is slow</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>12</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>73</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.907362</string>
<key>g</key>
<string>0.615564</string>
<key>r</key>
<string>0.437675</string>
</dict>
</dict>
<key>task</key>
<string>ROD writer -- in particular GFF for allele caller</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>13</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.898039</string>
<key>g</key>
<string>0.792157</string>
<key>r</key>
<string>0.219608</string>
</dict>
</dict>
<key>task</key>
<string>Provide external access to TraversalEngine data structures so that we can write algorithms that use reads, reference, rods outside of the walker system but using the AnalysisTK interface and loading routines.</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>15</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>12</integer>
<key>kind</key>
<integer>2</integer>
</dict>
<dict>
<key>id</key>
<integer>26</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.907362</string>
<key>g</key>
<string>0.615564</string>
<key>r</key>
<string>0.437675</string>
</dict>
</dict>
<key>task</key>
<string>On disk sorting of RODs -- see reading all data in memory in PrepareROD</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>16</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.898039</string>
<key>g</key>
<string>0.792157</string>
<key>r</key>
<string>0.219608</string>
</dict>
</dict>
<key>task</key>
<string>Enable window size in traversal -- N bases for loci, for example</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>86400</real>
<key>objectId</key>
<integer>17</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.898039</string>
<key>g</key>
<string>0.792157</string>
<key>r</key>
<string>0.219608</string>
</dict>
</dict>
<key>task</key>
<string>ByPair traversal -- ordered and unordered</string>
<key>workSeconds</key>
<real>86400</real>
<key>workTime</key>
<real>24</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>18</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>7</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.898039</string>
<key>g</key>
<string>0.792157</string>
<key>r</key>
<string>0.219608</string>
</dict>
</dict>
<key>task</key>
<string>Random Loci</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>19</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>18</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.898039</string>
<key>g</key>
<string>0.792157</string>
<key>r</key>
<string>0.219608</string>
</dict>
</dict>
<key>task</key>
<string>Random Reads</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>73</integer>
<integer>93</integer>
<integer>74</integer>
<integer>8</integer>
<integer>26</integer>
<integer>12</integer>
<integer>15</integer>
<integer>61</integer>
</array>
<key>objectId</key>
<integer>23</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.907362</string>
<key>g</key>
<string>0.615564</string>
<key>r</key>
<string>0.437675</string>
</dict>
</dict>
<key>task</key>
<string>Reference ordered data</string>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>forcedStart</key>
<string>20090317080000</string>
<key>objectId</key>
<integer>26</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>8</integer>
<key>kind</key>
<integer>2</integer>
</dict>
<dict>
<key>id</key>
<integer>73</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.907362</string>
<key>g</key>
<string>0.615564</string>
<key>r</key>
<string>0.437675</string>
</dict>
</dict>
<key>task</key>
<string>Jumping around in RODs</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>6</integer>
<integer>9</integer>
<integer>17</integer>
<integer>49</integer>
<integer>16</integer>
<integer>13</integer>
<integer>94</integer>
</array>
<key>objectId</key>
<integer>27</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.898039</string>
<key>g</key>
<string>0.792157</string>
<key>r</key>
<string>0.219608</string>
</dict>
</dict>
<key>task</key>
<string>Traversal algorithms</string>
</dict>
<dict>
<key>children</key>
<array>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<integer>121</integer>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<integer>91</integer>
<integer>103</integer>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<integer>113</integer>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<integer>125</integer>
<integer>126</integer>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<integer>120</integer>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
</array>
<key>objectId</key>
<integer>32</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
<string>Traversal engine generalization</string>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>33</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Resumable walker support -- Serialization and state saving of traversal engine</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>18</integer>
Slight improvements to allele caller interface; fixed problem with printing progress git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@260 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-03 00:44:12 +08:00
<integer>109</integer>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<integer>19</integer>
<integer>37</integer>
<integer>33</integer>
<integer>38</integer>
<integer>39</integer>
<integer>40</integer>
</array>
<key>objectId</key>
<integer>36</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Long-term projects</string>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>37</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Parallelization and chunking -- automatic parallelization -- how?  I/O? Hapdoop? LSF</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<key>doneSeconds</key>
<real>57600</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>effort</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<real>57600</real>
<key>effortDone</key>
<real>57600</real>
<key>forcedStart</key>
<string>20090413080000</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>objectId</key>
<integer>38</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Internal bug tracking -- catching errors and posting them to data for tracking?</string>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<key>workDone</key>
<real>16</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workSeconds</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<real>57600</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workTime</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<real>16</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>39</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Interfacing Java and Python -- how?  Want to write walkers in python for rapid prototyping</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>40</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Support for communal directory and naming system for reference ordered data -- I don't want to always have to provide command line flag for DBSNP when a walker needs it.  How do we we this?</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>44</integer>
<integer>46</integer>
<integer>47</integer>
<integer>78</integer>
<integer>79</integer>
<integer>80</integer>
<integer>83</integer>
<integer>95</integer>
<integer>96</integer>
rod's now have names. Use getName() to access it. Next step is better interface to accessing rods git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@286 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-04 00:41:33 +08:00
<integer>111</integer>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
</array>
<key>objectId</key>
<integer>41</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Short-term projects / bugs</string>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>28800</real>
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
<real>28800</real>
<key>objectId</key>
<integer>43</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
<string>Need a better way to dynamically tell the class of a walker instead of trying to cast it and catching the exception</string>
<key>workDone</key>
<real>8</real>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>44</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Optimize GenomeLoc so that comparison operations are cheaper. Right now we use contig strings (painful) and really should automatically index / intern the strings upon creation for fast comparisons. Maybe build fast lookup system with regex?</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>58</integer>
<integer>59</integer>
</array>
<key>isExpanded</key>
<false/>
<key>objectId</key>
<integer>45</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Faster loading of fasta file</string>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>46</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Fix: NullPointerException at sting.utils.Utils.setupRefContigOrdering.  When I leave out the reference, I get a SAMFormatException (I think because it defaults to expecting paired reads)</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>47</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Time per read base in performance output</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>49</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>17</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.898039</string>
<key>g</key>
<string>0.792157</string>
<key>r</key>
<string>0.219608</string>
</dict>
</dict>
<key>task</key>
<string>Spanning pairs traversal</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>41</integer>
<integer>36</integer>
</array>
<key>objectId</key>
<integer>50</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Proposed features</string>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>3</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>28800</real>
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
<real>28800</real>
<key>objectId</key>
<integer>52</integer>
<key>task</key>
<string>Choose replacement</string>
<key>workDone</key>
<real>8</real>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>3</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>28800</real>
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
<real>28800</real>
<key>objectId</key>
<integer>53</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>52</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>Add replacement code to project</string>
<key>workDone</key>
<real>8</real>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>86400</real>
<key>effort</key>
<real>86400</real>
<key>effortDone</key>
<real>86400</real>
<key>forcedStart</key>
<string>20090324080000</string>
<key>objectId</key>
<integer>54</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>53</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>Extend walkers to support extra arguments</string>
<key>workDone</key>
<real>24</real>
<key>workSeconds</key>
<real>86400</real>
<key>workTime</key>
<real>24</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>3</integer>
<integer>5</integer>
<integer>71</integer>
<integer>1</integer>
<integer>10</integer>
<integer>45</integer>
Updated todo list git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@251 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-02 04:31:42 +08:00
<integer>106</integer>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<integer>63</integer>
</array>
<key>objectId</key>
<integer>55</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
<string>Software engineering infrastructure</string>
</dict>
<dict>
<key>children</key>
<array>
<integer>7</integer>
<integer>11</integer>
</array>
<key>objectId</key>
<integer>56</integer>
<key>style</key>
<dict>
<key>font-size</key>
<real>12</real>
</dict>
<key>task</key>
<string>SAM/BAM Support</string>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>14</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>28800</real>
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
<real>28800</real>
<key>objectId</key>
<integer>58</integer>
<key>style</key>
<dict>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Faster reads</string>
<key>workDone</key>
<real>8</real>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>11</integer>
<key>units</key>
<real>0.75</real>
</dict>
</array>
<key>doneSeconds</key>
<real>19200</real>
<key>effort</key>
<real>14400</real>
<key>effortDone</key>
<real>14400</real>
<key>objectId</key>
<integer>59</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>58</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>style</key>
<dict>
<key>gantt-fill-color</key>
<dict>
<key>b</key>
<string>0.101961</string>
<key>g</key>
<string>0.101961</string>
<key>r</key>
<string>0.101961</string>
</dict>
</dict>
<key>task</key>
<string>Enable fast jumping to offset in fasta file by calculating minimum offset for next contig from dictionary</string>
<key>workDone</key>
<real>5.3333334922790527</real>
<key>workSeconds</key>
<real>19200</real>
<key>workTime</key>
<real>5.3333334922790527</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>61</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>15</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>Revised preprocessing algorithm for ROD incorporating new indexing and sorting systems</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>70</integer>
<integer>64</integer>
<integer>65</integer>
<integer>68</integer>
</array>
<key>objectId</key>
<integer>63</integer>
<key>task</key>
<string>Quality assurance and stress testing</string>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>64</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>70</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>Expand simple python script to handle more detailed list of BAM files to process, along with additional commands to execute the data on</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>65</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>64</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>Continue integration of stress test requests into a unified list</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>68</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>65</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>Enable tracking of results in GATK -- needs a stress test mode that will email if something fails</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>11</integer>
<key>units</key>
<real>0.75</real>
</dict>
</array>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>70</integer>
<key>task</key>
<string>Develop preliminary stress test system -- enable weekly testing of many files in common (CountReads, Pileup, etc.) to ensure the system can process files</string>
<key>workSeconds</key>
<real>38400</real>
<key>workTime</key>
<real>10.666666984558105</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>3</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<real>28800</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<real>28800</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>objectId</key>
<integer>71</integer>
<key>task</key>
<string>Logging system support</string>
<key>workDone</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<real>8</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>73</integer>
<key>task</key>
<string>Revise the reference metadata system, really think about the organization from scratch. A key issue will be dynamic loading of RMD, we need a mime like system and ways of registering handlers</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>3600</real>
<key>objectId</key>
<integer>74</integer>
<key>task</key>
<string>Rename to reference metadata, not ROD</string>
<key>workSeconds</key>
<real>3600</real>
<key>workTime</key>
<real>1</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>78</integer>
<key>task</key>
<string>Add support for "and onward" argument to location, so we can say "chr1:1+" will start from chr1 and continue onward for the rest of the file</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>effort</key>
<real>3600</real>
<key>objectId</key>
<integer>79</integer>
<key>task</key>
<string>Move interval interface into Picard</string>
<key>workSeconds</key>
<real>3600</real>
<key>workTime</key>
<real>1</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>7</integer>
<key>units</key>
<real>0.25</real>
</dict>
</array>
<key>effort</key>
<real>7200</real>
<key>objectId</key>
<integer>80</integer>
<key>task</key>
<string>Utilize Picard interval and expand functionality if at all possible</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>83</integer>
<key>task</key>
<string>The file progress meter is stupidly broken on lane /seq/dirseq/aphilipp/combo/sequences/pcr/samfiles/9701.7.clean.sam in CountReads mode</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>43</integer>
<integer>85</integer>
<integer>88</integer>
</array>
<key>forcedStart</key>
<string>20090323080000</string>
<key>objectId</key>
<integer>84</integer>
<key>task</key>
<string>Walker infrastructure</string>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<key>doneSeconds</key>
<real>28800</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>effort</key>
<real>28800</real>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<key>effortDone</key>
<real>28800</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>forcedStart</key>
<string>20090330080000</string>
<key>objectId</key>
<integer>85</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>43</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>Loading of walkers from external Jar file</string>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<key>workDone</key>
<real>8</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>28800</real>
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
<real>28800</real>
<key>forcedStart</key>
<string>20090326080000</string>
<key>objectId</key>
<integer>86</integer>
<key>task</key>
<string>Generalized walker class hierarchy</string>
<key>workDone</key>
<real>8</real>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>children</key>
<array>
<integer>54</integer>
<integer>86</integer>
<integer>90</integer>
</array>
<key>objectId</key>
<integer>88</integer>
<key>task</key>
<string>Feature rich base walker class</string>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>28800</real>
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
<real>28800</real>
<key>forcedStart</key>
<string>20090327080000</string>
<key>objectId</key>
<integer>90</integer>
<key>task</key>
<string>Output stream in walker for use in map/reduce</string>
<key>workDone</key>
<real>8</real>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>3</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<key>doneSeconds</key>
<real>172800</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>effort</key>
<real>172800</real>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<key>effortDone</key>
<real>172800</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>forcedStart</key>
<string>20090323080000</string>
<key>objectId</key>
<integer>91</integer>
<key>task</key>
<string>Separate traversal type, data sources, and execution managers into separate object hierarchy</string>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<key>workDone</key>
<real>48</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workSeconds</key>
<real>172800</real>
<key>workTime</key>
<real>48</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>93</integer>
<key>task</key>
<string>Develop sound, common core of RMD types, unify work of kris, andrew, etc. on affy type. Look into what tim has done.</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>94</integer>
<key>task</key>
<string>Upgrade interval traversals.  Allow nested / overlapping, etc. intervals, along with map getting info on our interval (pass in genomeLoc) and reduce receiving all of the map results over that interval. Handle RODs and Reference appropriately.</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>95</integer>
<key>task</key>
<string>itertools for java</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>96</integer>
<key>task</key>
<string>Generalize file line reading (readlines and xreadlines) and use it for parsing locations, etc</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<key>doneSeconds</key>
<real>28800</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>effort</key>
<real>28800</real>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<key>effortDone</key>
<real>28800</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>objectId</key>
<integer>97</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>98</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>General discovery + genotyping concordance tool</string>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<key>workDone</key>
<real>8</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
<dict>
<key>doneSeconds</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<real>57600</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>effort</key>
<real>57600</real>
<key>effortDone</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<real>57600</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>objectId</key>
<integer>98</integer>
<key>task</key>
<string>Development and testing of ByReference traversal</string>
<key>workDone</key>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<real>16</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workSeconds</key>
<real>57600</real>
<key>workTime</key>
<real>16</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<key>doneSeconds</key>
<real>43200</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>effort</key>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<real>43200</real>
<key>effortDone</key>
<real>43200</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>forcedStart</key>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<string>20090402080000</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>objectId</key>
<integer>103</integer>
<key>task</key>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<string>Create basic by locus threading prototype</string>
<key>workDone</key>
<real>12</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workSeconds</key>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<real>43200</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>workTime</key>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<real>12</real>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
</dict>
Updated todo list git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@251 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-02 04:31:42 +08:00
<dict>
<key>children</key>
<array>
<integer>107</integer>
<integer>108</integer>
</array>
<key>forcedStart</key>
<string>20090323080000</string>
<key>objectId</key>
<integer>106</integer>
<key>task</key>
<string>Dynamic merging of multiple input BAM files into single stream</string>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>11</integer>
<key>units</key>
<real>0.75</real>
</dict>
</array>
<key>doneSeconds</key>
<real>38400</real>
<key>effort</key>
<real>28800</real>
<key>effortDone</key>
<real>28800</real>
<key>objectId</key>
<integer>107</integer>
<key>task</key>
<string>Basic code support</string>
<key>workDone</key>
<real>10.666666984558105</real>
<key>workSeconds</key>
<real>38400</real>
<key>workTime</key>
<real>10.666666984558105</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>3</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>108</integer>
<key>task</key>
<string>Support in new data shard system</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
Slight improvements to allele caller interface; fixed problem with printing progress git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@260 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-03 00:44:12 +08:00
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>109</integer>
<key>task</key>
<string>Add mapping function from dict -&gt; dict so we can process 1KG data against HS_18 assembly</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
rod's now have names. Use getName() to access it. Next step is better interface to accessing rods git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@286 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-04 00:41:33 +08:00
<dict>
<key>effort</key>
<real>28800</real>
<key>objectId</key>
<integer>111</integer>
<key>task</key>
<string>Fix rodDBSNP</string>
<key>workSeconds</key>
<real>28800</real>
<key>workTime</key>
<real>8</real>
</dict>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<dict>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<key>doneSeconds</key>
<real>115200</real>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<key>effort</key>
<real>115200</real>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<key>effortDone</key>
<real>115200</real>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<key>forcedStart</key>
<string>20090406130000</string>
<key>objectId</key>
<integer>113</integer>
<key>task</key>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<string>Implement sharded single-threaded by reference traversal in with MicroManager</string>
<key>workDone</key>
<real>32</real>
Updated with last week / next week for 6 April. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@299 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-06 22:05:20 +08:00
<key>workSeconds</key>
<real>115200</real>
<key>workTime</key>
<real>32</real>
</dict>
added some updates to the omniplan git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@465 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 01:44:04 +08:00
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>3</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>139950</real>
<key>effort</key>
<real>279900</real>
<key>effortDone</key>
<real>139950</real>
<key>forcedStart</key>
<string>20090413090000</string>
<key>objectId</key>
<integer>120</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>113</integer>
<key>kind</key>
<integer>2</integer>
</dict>
<dict>
<key>id</key>
<integer>121</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>Unit test of the shattering and parallel prototype 0 code </string>
<key>workDone</key>
<real>38.875</real>
<key>workSeconds</key>
<real>279900</real>
<key>workTime</key>
<real>77.75</real>
</dict>
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>3</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>172260</real>
<key>effort</key>
<real>198000</real>
<key>effortDone</key>
<real>172260</real>
<key>forcedStart</key>
<string>20090402080000</string>
<key>objectId</key>
<integer>121</integer>
<key>prerequisites</key>
<array>
<dict>
<key>id</key>
<integer>91</integer>
<key>kind</key>
<integer>2</integer>
</dict>
</array>
<key>task</key>
<string>Create read and loci order shattering strategies</string>
<key>workDone</key>
<real>47.849998474121094</real>
<key>workSeconds</key>
<real>198000</real>
<key>workTime</key>
<real>55</real>
</dict>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<dict>
<key>assignments</key>
<array>
<dict>
<key>id</key>
<integer>2</integer>
<key>units</key>
<real>1</real>
</dict>
</array>
<key>doneSeconds</key>
<real>57600</real>
<key>effort</key>
<real>57600</real>
<key>effortDone</key>
<real>57600</real>
<key>forcedStart</key>
<string>20090413080000</string>
<key>objectId</key>
<integer>125</integer>
<key>task</key>
<string>Create and test stateless fasta file reader</string>
<key>workDone</key>
<real>16</real>
<key>workSeconds</key>
<real>57600</real>
<key>workTime</key>
<real>16</real>
</dict>
<dict>
<key>effort</key>
<real>86400</real>
<key>forcedStart</key>
<string>20090420081500</string>
<key>objectId</key>
<integer>126</integer>
<key>task</key>
<string>Integrate parallelism code into sharded MicroManager</string>
<key>workSeconds</key>
<real>86400</real>
<key>workTime</key>
<real>24</real>
</dict>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
</array>
<key>topResources</key>
<array>
<integer>-1</integer>
</array>
<key>topTasks</key>
<array>
<integer>-1</integer>
</array>
<key>uuid</key>
Matt's current status. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@466 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-18 02:03:11 +08:00
<string>576AFD44-5E1C-4722-A13C-81450FCA5F4F</string>
Check in the omniplan file for easier sharing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@228 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-31 05:31:54 +08:00
<key>version</key>
<integer>2</integer>
</dict>
</plist>