gatk-3.8/public/packages/PicardPrivate.xml

<?xml version="1.0" encoding="UTF-8"?>
<package name="picard-private-parts">
  <executable name="picard-private-parts">
    <dependencies>
      <class name="edu.mit.broad.picard.genotype.DiploidGenotype" />
      <class name="edu.mit.broad.picard.genotype.geli.GeliFileReader" />
      <class name="edu.mit.broad.picard.genotype.geli.GeliFileWriter" />
      <class name="edu.mit.broad.picard.genotype.geli.GenotypeLikelihoods" />
      <class name="edu.mit.broad.picard.util.PasteParser" />
      <class name="edu.mit.broad.picard.util.PicardAggregationFsUtil" />
      <class name="edu.mit.broad.picard.util.PicardFileSystemUtil" />
      <class name="edu.mit.broad.picard.variation.KnownVariantCodecV2" />
      <class name="edu.mit.broad.picard.variation.KnownVariantCodec" />
      <class name="edu.mit.broad.picard.variation.KnownVariantFileHeader" />
      <class name="edu.mit.broad.picard.variation.VariantType" />
      <class name="edu.mit.broad.picard.variation.ObsoleteKnownVariantCodecV1" />
      <class name="edu.mit.broad.picard.variation.AbstractKnownVariantCodec" />
      <class name="edu.mit.broad.picard.variation.KnownVariantIterator" />
      <class name="edu.mit.broad.picard.variation.KnownVariantCodecFactory" />
      <class name="edu.mit.broad.picard.variation.KnownVariant" />
      <class name="net.sf.picard.util.IlluminaUtil" />
      <class name="edu.mit.broad.picard.genotype.fingerprint.v2.FingerprintingSummaryMetrics" />
      <class name="edu.mit.broad.picard.genotype.concordance.DbSnpMatchMetrics" />
    </dependencies>

  </executable>
</package>