gatk-3.8/java/src/org/broadinstitute/sting/bwa/Alignment.java

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package org.broadinstitute.sting.bwa;
/**
* Represents an alignment of a read to a site in the reference genome.
*
* @author mhanna
* @version 0.1
*/
public interface Alignment extends Comparable<Alignment> {
/**
* Gets the score of this alignment.
* @return The score.
*/
public int getScore();
}