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gatk-3.8/public/testdata/VQSR.mixedTest.input

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Adding as many test data files into public/testdata as possible
2012-05-23 04:26:28 +08:00
##fileformat=VCFv4.1
#CHROM POS ID REF ALT QUAL FILTER INFO
20 1000177 . C T 345 PASS AC=43;AF=0.02053;AN=2094;BaseQRankSum=-0.234;DP=3748;DS;FS=5.678;HRun=2;HaplotypeScore=35.9850;InbreedingCoeff=0.0715;MQ=67.54;MQ0=0;MQRankSum=-0.549;QD=0.53;ReadPosRankSum=-13.245;set=EUR.admix
20 1000177 . CA C 82.64 PASS AC=43;AF=0.02053;AN=2094;BaseQRankSum=-0.234;DP=3748;DS;FS=5.678;HRun=2;HaplotypeScore=35.9850;InbreedingCoeff=0.0715;MQ=67.54;MQ0=0;MQRankSum=-0.549;QD=0.53;ReadPosRankSum=-13.245;set=EUR.admix
20 1000382 . C G 456 PASS AC=19;AF=0.00996;AN=1908;BaseQRankSum=3.153;DP=1249;FS=12.307;HRun=0;HaplotypeScore=25.9702;InbreedingCoeff=0.0716;MQ=49.54;MQ0=22;MQRankSum=-5.327;QD=2.71;ReadPosRankSum=-8.146;set=ASN.admix
20 1000382 . CCAAT C 246.44 PASS AC=19;AF=0.00996;AN=1908;BaseQRankSum=3.153;DP=1249;FS=12.307;HRun=0;HaplotypeScore=25.9702;InbreedingCoeff=0.0716;MQ=49.54;MQ0=22;MQRankSum=-5.327;QD=2.71;ReadPosRankSum=-8.146;set=ASN.admix
20 1000442 rs112800484 TTTCA T 28592.75 PASS AC=1034;AF=0.69583;AN=1486;BaseQRankSum=19.864;DB;DP=1304;FS=31.497;HRun=0;HaplotypeScore=17.6398;InbreedingCoeff=0.2728;MQ=46.55;MQ0=85;MQRankSum=-6.417;QD=30.65;ReadPosRankSum=-2.058;set=EUR.admix