gatk-3.8/public/java/src/org/broadinstitute/sting/pipeline/PipelineSample.java

/*
 * Copyright (c) 2010, The Broad Institute
 *
 * Permission is hereby granted, free of charge, to any person
 * obtaining a copy of this software and associated documentation
 * files (the "Software"), to deal in the Software without
 * restriction, including without limitation the rights to use,
 * copy, modify, merge, publish, distribute, sublicense, and/or sell
 * copies of the Software, and to permit persons to whom the
 * Software is furnished to do so, subject to the following
 * conditions:
 *
 * The above copyright notice and this permission notice shall be
 * included in all copies or substantial portions of the Software.
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
 * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
 * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
 * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
 * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
 * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
 * OTHER DEALINGS IN THE SOFTWARE.
 */

package org.broadinstitute.sting.pipeline;

import java.io.File;
import java.util.Map;
import java.util.TreeMap;

/**
 * Java bean defining a sample for a pipeline.
 */
public class PipelineSample {
    private String id;
    private Map<String, File> bamFiles = new TreeMap<String, File>();
    private Map<String, String> tags = new TreeMap<String, String>();

    public String getId() {
        return id;
    }

    public void setId(String id) {
        this.id = id;
    }

    public Map<String, File> getBamFiles() {
        return bamFiles;
    }

    public void setBamFiles(Map<String, File> bamFiles) {
        this.bamFiles = bamFiles;
    }

    public Map<String, String> getTags() {
        return tags;
    }

    public void setTags(Map<String, String> tags) {
        this.tags = tags;
    }
}