gatk-3.8/c/libenvironhack/Makefile

CC=gcc
CCFLAGS=-Wall -dynamiclib -arch i386 -arch x86_64

libenvironhack.dylib: libenvironhack.c
	$(CC) $(CCFLAGS) -init _init_environ $< -o $@

all: libenvironhack.dylib

clean:
	rm -f libenvironhack.dylib
Switched from LSF command line wrappers to JNA wrappers around the C API. Side effects: - bsub command line is no longer fully printed out. - extraBsubArgs hack is now a callback function updateJobRun. Updated FullCallingPipelineTest to reflect latest changes to fullCallingPipeline.q. Added a pipeline that tests the UGv2 runtimes at different bam counts and memory limits. Updated VE packages that live in oneoffs to compile to oneoffs. Added a hack to replace the deprecated symbol environ in Mac OS X 10.5+ which is needed by LSF7 on Mac. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4816 348d0f76-0448-11de-a6fe-93d51630548a 2010-12-10 12:36:06 +08:00			`CC=gcc`
			`CCFLAGS=-Wall -dynamiclib -arch i386 -arch x86_64`

			`libenvironhack.dylib: libenvironhack.c`
			`$(CC) $(CCFLAGS) -init _init_environ $< -o $@`

			`all: libenvironhack.dylib`

			`clean:`
			`rm -f libenvironhack.dylib`