gatk-3.8/scala/src/org/broadinstitute/sting/queue/QException.scala

package org.broadinstitute.sting.queue

import org.broadinstitute.sting.utils.exceptions.StingException

class QException(private val message: String, private val throwable: Throwable = null)
  extends StingException(message, throwable)
A cleaned up functioning early, early access version of Queue for others to play with and provide feedback about next steps. Current version only has syntatic sugar for accessing the graph via rules ex. "bam" -> "bam.bai", "samtools index ${bam}" and DOES NOT have sugar for constructing your own graph. Usage info on the internal wiki at https://iwww.broadinstitute.org/gsa/wiki/index.php/Queue git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3420 348d0f76-0448-11de-a6fe-93d51630548a 2010-05-24 04:21:09 +08:00			`package org.broadinstitute.sting.queue`

Fix for Queue git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4268 348d0f76-0448-11de-a6fe-93d51630548a 2010-09-12 23:18:08 +08:00			`import org.broadinstitute.sting.utils.exceptions.StingException`
Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input. Checked in example qscripts that are basically todo integration tests. Replaced use of queue @Input/@Output with Sting's new @Input/@Output. This means you'll now have to doc-ument the annotations. More work on dependency resolution cycles being created in the graph during scatter/gather. Filtering nulls to avoid NPE exceptions in scala's 'Collection'.hashCode. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3643 348d0f76-0448-11de-a6fe-93d51630548a 2010-06-26 04:51:13 +08:00
A cleaned up functioning early, early access version of Queue for others to play with and provide feedback about next steps. Current version only has syntatic sugar for accessing the graph via rules ex. "bam" -> "bam.bai", "samtools index ${bam}" and DOES NOT have sugar for constructing your own graph. Usage info on the internal wiki at https://iwww.broadinstitute.org/gsa/wiki/index.php/Queue git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3420 348d0f76-0448-11de-a6fe-93d51630548a 2010-05-24 04:21:09 +08:00			`class QException(private val message: String, private val throwable: Throwable = null)`
Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input. Checked in example qscripts that are basically todo integration tests. Replaced use of queue @Input/@Output with Sting's new @Input/@Output. This means you'll now have to doc-ument the annotations. More work on dependency resolution cycles being created in the graph during scatter/gather. Filtering nulls to avoid NPE exceptions in scala's 'Collection'.hashCode. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3643 348d0f76-0448-11de-a6fe-93d51630548a 2010-06-26 04:51:13 +08:00			`extends StingException(message, throwable)`