14 lines
480 B
Python
14 lines
480 B
Python
|
#!/usr/bin/env python
|
||
|
|
|
||
|
|
import sys
|
||
|
|
import os
|
||
|
|
|
||
|
|
bam_file = sys.argv[1]
|
||
|
|
project = sys.argv[2]
|
||
|
|
directory = bam_file.rsplit("/",1)[0]+"/"
|
||
|
|
sample_id = bam_file.rsplit("/",1)[1].rsplit(".",1)[0]
|
||
|
|
is_metrics = directory+sample_id+".insert_size_metrics"
|
||
|
|
his_metrics = directory+sample_id+".hybrid_selection_metrics"
|
||
|
|
ali_metrics = directory+sample_id+".alignment_summary_metrics"
|
||
|
|
os.system("zip -j "+project+"_"+sample_id+"_sequencing_metrics"+" "+is_metrics+" "+his_metrics+" "+ali_metrics)
|