75 lines
2.3 KiB
Java
75 lines
2.3 KiB
Java
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package org.broadinstitute.sting.utils.cmdLine;
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import org.broadinstitute.sting.BaseTest;
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import org.junit.Test;
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import org.junit.Before;
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import org.junit.Assert;
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/**
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* Created by IntelliJ IDEA.
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* User: mhanna
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* Date: May 3, 2009
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* Time: 6:05:33 PM
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* <p/>
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* The Broad Institute
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* SOFTWARE COPYRIGHT NOTICE AGREEMENT
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* This software and its documentation are copyright 2009 by the
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* Broad Institute/Massachusetts Institute of Technology. All rights are reserved.
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* <p/>
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* This software is supplied without any warranty or guaranteed support whatsoever. Neither
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* the Broad Institute nor MIT can be responsible for its use, misuse, or functionality.
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*/
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/**
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* Test suite for the parsing engine.
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*/
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public class ParsingEngineTest extends BaseTest {
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private ParsingEngine parsingEngine;
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@Before
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public void setUp() {
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parsingEngine = new ParsingEngine();
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}
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private class InputFileArgProvider {
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@Argument(fullName="input_file",shortName="I")
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public String inputFile;
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}
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@Test
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public void shortNameArgumentTest() {
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final String[] commandLine = new String[] {"-I","na12878.bam"};
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parsingEngine.addArgumentSources( InputFileArgProvider.class );
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ArgumentMatches argumentMatches = parsingEngine.parse( commandLine );
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parsingEngine.validate(argumentMatches);
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InputFileArgProvider argProvider = new InputFileArgProvider();
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parsingEngine.loadArgumentsIntoObject( argProvider, argumentMatches);
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Assert.assertEquals("Argument is not correctly initialized", "na12878.bam", argProvider.inputFile );
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}
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// To test
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// 'Composite' short names
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// long names
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// flags
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// flags with arguments at every point on the line
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// flags with arguments at the end of the line
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/*
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@Test
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public void shortNameCompositeArgumentTest() {
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final String[] commandLine = new String[] {"-I na12878.bam"};
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parsingEngine.addArgumentSources( InputFileArgProvider.class );
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ArgumentMatches argumentMatches = parsingEngine.parse( commandLine );
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parsingEngine.validate(argumentMatches);
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InputFileArgProvider argProvider = new InputFileArgProvider();
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parsingEngine.loadArgumentsIntoObject( argProvider, argumentMatches);
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Assert.assertEquals("Argument is not correctly initialized", "na12878.bam" );
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}
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*/
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}
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