gatk-3.8/shell/syncWithDevOnGSA2.csh

#!/bin/tcsh

setenv HERE "java tribble scala analysis"
setenv THERE \~/dev/GenomeAnalysisTKFromLaptop/trunk

rsync -e ssh -aCvz $HERE depristo@gsa1:$THERE
Useful script for me git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4704 348d0f76-0448-11de-a6fe-93d51630548a 2010-11-18 23:21:06 +08:00			`#!/bin/tcsh`

V3 of the distributed GATK. High-efficiency implementation. Support for status tracking for debugging and display. Still not safe for production use due to NFS filelock problem. V4 will use alternative file locking mechanism git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5063 348d0f76-0448-11de-a6fe-93d51630548a 2011-01-25 00:45:07 +08:00			`setenv HERE "java tribble scala analysis"`
Useful script for me git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4704 348d0f76-0448-11de-a6fe-93d51630548a 2010-11-18 23:21:06 +08:00			`setenv THERE \~/dev/GenomeAnalysisTKFromLaptop/trunk`

Deleting old shell code git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4962 348d0f76-0448-11de-a6fe-93d51630548a 2011-01-08 05:36:16 +08:00			`rsync -e ssh -aCvz $HERE depristo@gsa1:$THERE`