gatk-3.8/settings/helpTemplates/generic.index.template.html

<!--
  ~ Copyright (c) 2012, The Broad Institute
  ~
  ~ Permission is hereby granted, free of charge, to any person
  ~ obtaining a copy of this software and associated documentation
  ~ files (the "Software"), to deal in the Software without
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  ~ copies of the Software, and to permit persons to whom the
  ~ Software is furnished to do so, subject to the following
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  ~ The above copyright notice and this permission notice shall be
  ~ included in all copies or substantial portions of the Software.
  ~ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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<#include "common.html"/>

<#macro emitGroup group>
    <div class="accordion-group">
        <div class="accordion-heading">
            <a class="accordion-toggle" data-toggle="collapse" data-parent="#index" href="#${group.id}">
                <h4>${group.name}</h4>
            </a>
        </div>
        <div class="accordion-body collapse" id="${group.id}">
            <div class="accordion-inner">
                <p class="lead">${group.summary}</p>
                <table class="table table-striped table-bordered table-condensed">
                    <tr>
                        <th>Name</th>
                        <th>Summary</th>
                    </tr>
                    <#list data as datum>
                        <#if datum.group == group.name>
                            <tr>
                                <td><a href="${datum.filename}">${datum.name}</a></td>
                                <td>${datum.summary}</td>
                            </tr>
                        </#if>
                    </#list>
                </table>
            </div>
        </div>
    </div>
</#macro>

<@makeHeader title="GATK | Tool Documentation Index" isIndex=true />
<h1>Tool Documentation Index
    <small>${version}</small>
</h1>
<div class="accordion" id="index">
    <#assign seq = ["engine", "tools", "utilities", "other"]>
	<#list seq as supercat>
		<hr>
		<#list groups?sort_by("name") as group>
			<#if group.supercat == supercat>
				<@emitGroup group=group/>
			</#if>
		</#list>
	</#list>
</div>

<@footerInfo />
<@pageFooter />