gatk-3.8/analysis/depristo/distributedGATK/fileBackedGLPperformance.R

#d <- read.table("../GATK/trunk/timer.dat", header=T)
require("lattice")
print(xyplot(elapsed.time + delta ~ cycle | name, data=d, scales=list(relation="free"), auto.key=T, type="b", outer=T))
Documentation and cleanup of the distributed GATK implementation. Detailed documentation -- given that Matt will be extending the system in the near future -- about how the locking and processing trackers work. Added error trapping to note that distributed, shared-memory parallelism isn't yet implemented, instead of just not working silently. General utility function for the analysis of distributedGATK operation in the analysis directory git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5106 348d0f76-0448-11de-a6fe-93d51630548a 2011-01-28 11:40:09 +08:00			`#d <- read.table("../GATK/trunk/timer.dat", header=T)`
			`require("lattice")`
			`print(xyplot(elapsed.time + delta ~ cycle \| name, data=d, scales=list(relation="free"), auto.key=T, type="b", outer=T))`