gatk-3.8/packages/Aligner.xml

<?xml version="1.0" encoding="UTF-8"?>
<package name="Aligner">
  <executable name="Aligner">
    <dependencies>
      <!-- BWA/C aligner implementation -->
      <class name="org.broadinstitute.sting.alignment.bwa.c.BWACAligner" />
    </dependencies>
  </executable>
</package>
Added an aligner package to make it easier for people to use outside the GATK. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2206 348d0f76-0448-11de-a6fe-93d51630548a 2009-12-02 07:04:10 +08:00			`<?xml version="1.0" encoding="UTF-8"?>`
Cleanup and formatting overhaul. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2652 348d0f76-0448-11de-a6fe-93d51630548a 2010-01-22 03:22:56 +08:00			`<package name="Aligner">`
			`<executable name="Aligner">`
Update packaging system to produce multiple jars if asked nicely. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2246 348d0f76-0448-11de-a6fe-93d51630548a 2009-12-04 01:11:12 +08:00			`<dependencies>`
			`<!-- BWA/C aligner implementation -->`
Cleanup and formatting overhaul. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2652 348d0f76-0448-11de-a6fe-93d51630548a 2010-01-22 03:22:56 +08:00			`<class name="org.broadinstitute.sting.alignment.bwa.c.BWACAligner" />`
Update packaging system to produce multiple jars if asked nicely. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2246 348d0f76-0448-11de-a6fe-93d51630548a 2009-12-04 01:11:12 +08:00			`</dependencies>`
			`</executable>`
Added an aligner package to make it easier for people to use outside the GATK. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2206 348d0f76-0448-11de-a6fe-93d51630548a 2009-12-02 07:04:10 +08:00			`</package>`