gatk-3.8/public/java/src/org/broadinstitute/sting/commandline/ArgumentMatchSite.java

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/*
* Copyright (c) 2011, The Broad Institute
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
*
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
*/
package org.broadinstitute.sting.commandline;
/**
* Which source and the index within the source where an argument match was found.
*/
public class ArgumentMatchSite implements Comparable<ArgumentMatchSite> {
private final ArgumentMatchSource source;
private final int index;
public ArgumentMatchSite(ArgumentMatchSource source, int index) {
this.source = source;
this.index = index;
}
public ArgumentMatchSource getSource() {
return source;
}
public int getIndex() {
return index;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
ArgumentMatchSite that = (ArgumentMatchSite) o;
return (index == that.index) && (source == null ? that.source == null : source.equals(that.source));
}
@Override
public int hashCode() {
int result = source != null ? source.hashCode() : 0;
// Generated by intellij. No other special reason to this implementation. -ks
result = 31 * result + index;
return result;
}
@Override
public int compareTo(ArgumentMatchSite that) {
int comp = this.source.compareTo(that.source);
if (comp != 0)
return comp;
// Both files are the same.
if (this.index == that.index)
return 0;
return this.index < that.index ? -1 : 1;
}
}