2010-02-11 22:09:30 +08:00
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#!/usr/bin/env python
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import sys
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import os
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bam_file = sys.argv[1]
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2010-03-29 21:32:00 +08:00
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fingerprint_file = sys.argv[2]
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project = sys.argv[3]
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2010-02-11 22:09:30 +08:00
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directory = bam_file.rsplit("/",1)[0]+"/"
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sample_id = bam_file.rsplit("/",1)[1].rsplit(".",1)[0]
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is_metrics = directory+sample_id+".insert_size_metrics"
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his_metrics = directory+sample_id+".hybrid_selection_metrics"
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ali_metrics = directory+sample_id+".alignment_summary_metrics"
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2010-03-29 21:32:00 +08:00
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os.system("zip -j "+project+"_"+sample_id+"_sequencing_metrics"+" "+is_metrics+" "+his_metrics+" "+ali_metrics+" "+fingerprint_file)
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