24 lines
2.5 KiB
Plaintext
24 lines
2.5 KiB
Plaintext
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##fileformat=VCFv4.0
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##source=ArbitrarySource
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##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth (only filtered reads used for calling)">
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##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality">
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##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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##INFO=<ID=AB,Number=1,Type=Float,Description="Allele Balance for hets (ref/(ref+alt))">
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##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
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##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
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##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
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##reference=human_b36_both.fasta
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#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003
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1 10001292 testid1 G A 12.22 PASS AF=0.50;AlleleBalance=0.57;DoC=23;HomopolymerRun=0;MAPQ0=8;NS=1;RMSMAPQ=46.31;SB=-24.92;SpanningDeletions=0 GT:DP:GQ 1/0:23:19.27 ./. ./.
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1 10002963 . C G 22.22 . AF=0.50;AlleleBalance=0.47;DoC=30;HomopolymerRun=0;MAPQ0=0;NS=1;RMSMAPQ=81.91;SB=-41.73;SpanningDeletions=0 GT:DP:GQ 0/1:30:33.07 ./. ./.
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1 10005008 . A T,C 123.78 PASS AF=1.00;DoC=30;HomopolymerRun=6;MAPQ0=2;NS=1;RMSMAPQ=61.05;SB=-75.45;SpanningDeletions=1 GT:DP:GQ 1/1:27:4.03 0/1:26:3.0 0/0:16:2.0
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1 10006296 . C T 42.23 PASS AF=0.50;AlleleBalance=0.33;DoC=7;HomopolymerRun=0;MAPQ0=11;NS=1;RMSMAPQ=46.62;SB=-0.04;SpanningDeletions=0 GT:DP:GQ 0/1:7:2000000 ./. ./.
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1 10023478 . G C,A,T 84.23 . AF=1.00;DoC=27;HomopolymerRun=1;MAPQ0=10;NS=1;RMSMAPQ=42.16;SB=-48.38;SpanningDeletions=0 GT:DP:GQ 1/1:27:4.03 2/2:26:3.0 0/3:16:2.0
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1 10029362 . T C 52.22 . AF=0.50;AlleleBalance=0.52;DoC=44;HomopolymerRun=0;MAPQ0=0;NS=1;RMSMAPQ=81.28;SB=-42.22;SpanningDeletions=0 GT:DP:GQ ./. 1/0:-1:36.62 ./.
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1 10042312 . G C 31.81 . AF=0.50;AlleleBalance=0.70;DoC=24;HomopolymerRun=1;MAPQ0=0;NS=1;RMSMAPQ=85.07;SB=0.00;SpanningDeletions=0 GT:DP:GQ 1/0:.:5.85 0/0 0/1:4
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1 10044557 . C T 62.22 . AF=0.50;AlleleBalance=0.68;DoC=31;HomopolymerRun=16;MAPQ0=0;NS=1;RMSMAPQ=85.34;SB=-0.00;SpanningDeletions=0 GT:DP:GQ ./. ./. 0/1:31:15.01
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1 10045603 . AAAA A 40.26 PASS AF=0.50 GT:DP:GQ 0/1:15:7.94 0/0:15:7.94 1/1:15:7.94
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1 10045604 . A ACAT 41.26 PASS AF=0.50 GT:DP:GQ 1/1:14:6.94 0/0:15:7.94 1/0:15:7.94
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1 10048142 . A G 126.81 foo AF=1.00;DoC=36;HomopolymerRun=4;MAPQ0=0;NS=1;RMSMAPQ=82.11;SB=-85.45;SpanningDeletions=0 GT:DP:GQ 0/1:15:7.94 0/0:15:7.94 1/1:15:7.94
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1 10048580 . T A 72.22 bar;baz AF=0.50;AlleleBalance=0.69;DoC=33;HomopolymerRun=6;MAPQ0=0;NS=1;RMSMAPQ=84.45;SB=-27.41;SpanningDeletions=0 GT:DP:GQ 0/1:15:7.94 0/0:15:7.94 1/1:15:7.94
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