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gatk-3.8/packages/VariantEval.xml

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Port VariantEval and FindContaminatingReadGroups to modules. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2634 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-20 06:10:33 +08:00
<?xml version="1.0" encoding="UTF-8"?>
Cleanup and formatting overhaul. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2652 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-22 03:22:56 +08:00
<package name="VariantEval">
<executable name="VariantEval">
<main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
<resource-bundle file="StingText.properties" />
Port VariantEval and FindContaminatingReadGroups to modules. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2634 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-20 06:10:33 +08:00
<dependencies>
Added VariantEval to the GATK release. Woo hoo. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2763 348d0f76-0448-11de-a6fe-93d51630548a
2010-02-02 10:38:39 +08:00
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.VariantEvalWalker" />
Adding VE modules to package git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3185 348d0f76-0448-11de-a6fe-93d51630548a
2010-04-16 22:44:06 +08:00
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.CountVariants" />
Renaming for consistency git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3221 348d0f76-0448-11de-a6fe-93d51630548a
2010-04-21 11:00:43 +08:00
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.CompOverlap" />
Adding VE modules to package git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3185 348d0f76-0448-11de-a6fe-93d51630548a
2010-04-16 22:44:06 +08:00
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.GenotypeConcordance" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.MendelianViolationEvaluator" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.TiTvVariantEvaluator" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.ValidationRate" />
<class name="org.broadinstitute.sting.gatk.walkers.varianteval.VariantQualityScore" />
Port VariantEval and FindContaminatingReadGroups to modules. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2634 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-20 06:10:33 +08:00
</dependencies>
</executable>
</package>