31 lines
956 B
Java
31 lines
956 B
Java
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package org.broadinstitute.sting.gatk.refdata;
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import org.broadinstitute.sting.utils.GenomeLoc;
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/**
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* Created by IntelliJ IDEA.
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* User: mdepristo
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* Date: Feb 27, 2009
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* Time: 10:49:47 AM
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* To change this template use File | Settings | File Templates.
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*/
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public abstract class ReferenceOrderedDatum implements Comparable<ReferenceOrderedDatum> {
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public ReferenceOrderedDatum() { }
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public abstract void parseLine(final String[] parts);
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public abstract String toString();
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public abstract String toSimpleString();
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public abstract String repl();
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public abstract GenomeLoc getLocation();
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public int compareTo( ReferenceOrderedDatum that ) {
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return getLocation().compareTo(that.getLocation());
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}
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public final String getContig() { return getLocation().getContig(); }
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public final long getStart() { return getLocation().getStart(); }
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public final long getStop() { return getLocation().getStop(); }
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}
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