21 lines
611 B
Java
21 lines
611 B
Java
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package org.broadinstitute.sting.gatk.refdata;
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import org.broadinstitute.sting.utils.GenomeLoc;
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import org.broadinstitute.sting.utils.GenomeLocParser;
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public class CleanedOutSNPROD extends TabularROD {
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private static final String REAL_SNP_STRING = "SAME_SNP";
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private static final String FALSE_SNP_STRING = "NOT_SNP";
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public CleanedOutSNPROD(String name) {
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super(name);
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}
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public GenomeLoc getLocation() {
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return GenomeLocParser.parseGenomeLoc(this.get("0"));
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}
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public boolean isRealSNP() { return this.get("1").equals(REAL_SNP_STRING); }
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}
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