gatk-3.8/public/java/src/org/broadinstitute/sting/commandline/ArgumentMatchSource.java

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/*
* Copyright (c) 2011, The Broad Institute
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
*
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
*/
package org.broadinstitute.sting.commandline;
import java.io.File;
/**
* Where an argument match originated, via the commandline or a file.
*/
public class ArgumentMatchSource implements Comparable<ArgumentMatchSource> {
public static final ArgumentMatchSource COMMAND_LINE = new ArgumentMatchSource(ArgumentMatchSourceType.CommandLine, null);
private final ArgumentMatchSourceType type;
private final File file;
/**
* Creates an argument match source from the specified file.
* @param file File specifying the arguments. Must not be null.
*/
public ArgumentMatchSource(File file) {
this(ArgumentMatchSourceType.File, file);
}
private ArgumentMatchSource(ArgumentMatchSourceType type, File file) {
if (type == ArgumentMatchSourceType.File && file == null)
throw new IllegalArgumentException("An argument match source of type File cannot have a null file.");
this.type = type;
this.file = file;
}
public ArgumentMatchSourceType getType() {
return type;
}
public File getFile() {
return file;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
ArgumentMatchSource that = (ArgumentMatchSource) o;
return (type == that.type) && (file == null ? that.file == null : file.equals(that.file));
}
@Override
public int hashCode() {
int result = type != null ? type.hashCode() : 0;
result = 31 * result + (file != null ? file.hashCode() : 0);
return result;
}
/**
* Compares two sources, putting the command line first, then files.
*/
@Override
public int compareTo(ArgumentMatchSource that) {
int comp = this.type.compareTo(that.type);
if (comp != 0)
return comp;
File f1 = this.file;
File f2 = that.file;
if ((f1 == null) ^ (f2 == null)) {
// If one of the files is null and the other is not
// put the null file first
return f1 == null ? -1 : 1;
}
return f1 == null ? 0 : f1.compareTo(f2);
}
}