45 lines
1.6 KiB
Java
45 lines
1.6 KiB
Java
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/*
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* Copyright (c) 2010.
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*
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* Permission is hereby granted, free of charge, to any person
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* obtaining a copy of this software and associated documentation
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* files (the "Software"), to deal in the Software without
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* restriction, including without limitation the rights to use,
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* copy, modify, merge, publish, distribute, sublicense, and/or sell
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* copies of the Software, and to permit persons to whom the
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* Software is furnished to do so, subject to the following
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* conditions:
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*
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* The above copyright notice and this permission notice shall be
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* included in all copies or substantial portions of the Software.
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*
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* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR
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* THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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*/
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package org.broadinstitute.sting.gatk.io;
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import org.broad.tribble.vcf.StandardVCFWriter;
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import org.apache.commons.compress.compressors.bzip2.BZip2CompressorOutputStream;
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import java.io.OutputStream;
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import java.io.IOException;
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/**
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* A writer that will allow bzipped VCF files written on-the-fly.
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*
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* @author ebanks
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* @version 0.1
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*/
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public class CompressedVCFWriter extends StandardVCFWriter {
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public CompressedVCFWriter(OutputStream output) throws IOException {
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super(new BZip2CompressorOutputStream(output));
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}
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}
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