42 lines
1.5 KiB
Java
42 lines
1.5 KiB
Java
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package org.broadinstitute.sting.commandline;
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import org.broadinstitute.sting.BaseTest;
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import org.broadinstitute.sting.WalkerTest;
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import org.broadinstitute.sting.utils.exceptions.UserException;
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import org.testng.annotations.Test;
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import org.testng.annotations.DataProvider;
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/**
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* Created by IntelliJ IDEA.
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* User: chartl
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* Date: 8/31/12
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* Time: 11:03 AM
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* To change this template use File | Settings | File Templates.
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*/
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public class InvalidArgumentIntegrationTest extends WalkerTest {
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private static final String callsB36 = BaseTest.validationDataLocation + "lowpass.N3.chr1.raw.vcf";
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private WalkerTest.WalkerTestSpec baseTest(String flag, String arg, Class exeption) {
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return new WalkerTest.WalkerTestSpec("-T VariantsToTable -M 10 --variant:vcf "
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+ callsB36 + " -F POS,CHROM -R "
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+ b36KGReference + " -o %s " + flag + " " + arg,
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1, exeption);
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}
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@Test
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public void testUnknownReadFilter() {
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executeTest("UnknownReadFilter",baseTest("-rf","TestUnknownReadFilter", UserException.MalformedReadFilterException.class));
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}
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@Test
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public void testMalformedWalkerArgs() {
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executeTest("MalformedWalkerArgs",
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new WalkerTest.WalkerTestSpec("-T UnknownWalkerName -M 10 --variant:vcf "
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+ callsB36 + " -F POS,CHROM -R "
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+ b36KGReference + " -o %s ",
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1, UserException.MalformedWalkerArgumentsException.class));
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}
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}
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