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gatk-3.8/python/1kgScripts/runme_freeze5.1.csh

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Improvements to the CountCovariates and TableRecablirator, as well as regression tests for SLX and 454 data git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1539 348d0f76-0448-11de-a6fe-93d51630548a
2009-09-05 06:26:57 +08:00
python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d freeze5.1 -q gsa lists/low_coverage_freeze5.list -n lists/naids_and_pop.txt
python ~/dev/GenomeAnalysisTK/trunk/python/MergeBAMBatch.py -d freeze5.1 -q gsa -s lists/trios_freeze5.list