gatk-3.8/scala/src/org/broadinstitute/sting/queue/engine/QNode.scala

package org.broadinstitute.sting.queue.engine

/**
 * Represents a state between QFunctions the directed acyclic QGraph
 */
case class QNode (val items: Set[Any])
Replaced pattern matched pipeline spec with annotated objects. Old version is no longer available. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3558 348d0f76-0448-11de-a6fe-93d51630548a 2010-06-15 12:43:46 +08:00			`package org.broadinstitute.sting.queue.engine`

			`/**`
			`* Represents a state between QFunctions the directed acyclic QGraph`
			`*/`
Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input. Checked in example qscripts that are basically todo integration tests. Replaced use of queue @Input/@Output with Sting's new @Input/@Output. This means you'll now have to doc-ument the annotations. More work on dependency resolution cycles being created in the graph during scatter/gather. Filtering nulls to avoid NPE exceptions in scala's 'Collection'.hashCode. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3643 348d0f76-0448-11de-a6fe-93d51630548a 2010-06-26 04:51:13 +08:00			`case class QNode (val items: Set[Any])`