gatk-3.8/public/VectorPairHMM/src/main/c++/template.h

/*Copyright (c) 2012 The Broad Institute

*Permission is hereby granted, free of charge, to any person
*obtaining a copy of this software and associated documentation
*files (the "Software"), to deal in the Software without
*restriction, including without limitation the rights to use,
*copy, modify, merge, publish, distribute, sublicense, and/or sell
*copies of the Software, and to permit persons to whom the
*Software is furnished to do so, subject to the following
*conditions:

*The above copyright notice and this permission notice shall be
*included in all copies or substantial portions of the Software.

*THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
*EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
*OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
*NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
*HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
*WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
*FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR
*THE USE OR OTHER DEALINGS IN THE SOFTWARE.
*/


#ifndef TEMPLATES_H_
#define TEMPLATES_H_

#include "headers.h"


#define ALIGNED __attribute__((aligned(32)))

#ifdef SIMD_ENGINE_AVX
typedef union __attribute__((aligned(32))) {
        ALIGNED __m256 ALIGNED d;
        ALIGNED __m128i ALIGNED s[2];
        ALIGNED float  ALIGNED f[8];
        ALIGNED __m256i ALIGNED i;
} ALIGNED mix_F ALIGNED;
#endif

typedef union __attribute__((aligned(32))) {
        ALIGNED __m128 ALIGNED d;
        ALIGNED __m64 ALIGNED s[2];
        ALIGNED float  ALIGNED f[4];
        ALIGNED __m128i ALIGNED i;
} ALIGNED mix_F128 ALIGNED;

typedef union ALIGNED {
  __m128i vec ;
  __m128 vecf ;
  uint32_t masks[4] ;
} MaskVec_F ;

typedef union ALIGNED {
  __m64 vec ;
  __m64 vecf ;
  uint32_t masks[2] ;
} MaskVec_F128 ;

typedef union ALIGNED
{
        ALIGNED __m128i ALIGNED i;
        ALIGNED __m128 ALIGNED f;
} ALIGNED IF_128f ALIGNED;

typedef union ALIGNED
{
        ALIGNED int    ALIGNED i;
        ALIGNED float  ALIGNED f;
} ALIGNED IF_32 ALIGNED;

#ifdef SIMD_ENGINE_AVX
typedef union __attribute__((aligned(32))) {
        ALIGNED __m256d ALIGNED d;
        ALIGNED __m128i ALIGNED s[2];
        ALIGNED double  ALIGNED f[4];
        ALIGNED __m256i ALIGNED i;
} ALIGNED mix_D ALIGNED;
#endif

typedef union __attribute__((aligned(32))) {
        ALIGNED __m128d ALIGNED d;
        ALIGNED __m64 ALIGNED s[2];
        ALIGNED double  ALIGNED f[2];
        ALIGNED __m128i ALIGNED i;
} ALIGNED mix_D128 ALIGNED;

typedef union ALIGNED {
  __m128i vec ;
  __m128d vecf ;
  uint64_t masks[2] ;
} MaskVec_D ;

typedef union ALIGNED {
  __m64 vec ;
  __m64 vecf ;
  uint64_t masks[1] ;
} MaskVec_D128 ;

typedef union ALIGNED
{
        ALIGNED __m128i ALIGNED i;
        ALIGNED __m128d ALIGNED f;
} ALIGNED IF_128d ALIGNED;

typedef union ALIGNED
{
        ALIGNED int64_t ALIGNED i;
        ALIGNED double  ALIGNED f;
} ALIGNED IF_64 ALIGNED;


#include "common_data_structure.h"

#endif