18 lines
517 B
Scala
18 lines
517 B
Scala
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package org.broadinstitute.sting.queue.engine
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import org.broadinstitute.sting.queue.util.{Logging, ProcessUtils}
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import org.broadinstitute.sting.queue.function.CommandLineFunction
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/**
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* Runs jobs one at a time locally
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*/
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trait CommandLineRunner extends Logging {
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def run(function: CommandLineFunction, qGraph: QGraph) = {
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var commandLine = function.commandLine
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logger.info(commandLine)
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if (!qGraph.dryRun)
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ProcessUtils.runCommandAndWait(function.commandLine, function.commandDirectory)
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}
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}
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