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gatk-3.8/public/testdata/exampleDBSNP.vcf

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PPP pipeline test * added a pipeline test to the Pacbio Processing Pipeline. * updated exampleBAM with more complete RG information so we can use it in a wider variety of pipeline tests * added exampleDBSNP.vcf file with only chromosome 1 in the range of the exampleFASTA.fasta reference for pipeline tests
2011-12-12 02:16:23 +08:00
##fileformat=VCFv4.1
##FILTER=<ID=NC,Description="Inconsistent Genotype Submission For At Least One Sample">
##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=ASP,Number=0,Type=Flag,Description="Is Assembly specific. This is set if the variant only maps to one assembly">
##INFO=<ID=ASS,Number=0,Type=Flag,Description="In acceptor splice site FxnCode = 73">
##INFO=<ID=CDA,Number=0,Type=Flag,Description="Variation is interrogated in a clinical diagnostic assay">
##INFO=<ID=CFL,Number=0,Type=Flag,Description="Has Assembly conflict. This is for weight 1 and 2 variant that maps to different chromosomes on different assemblies.">
##INFO=<ID=CLN,Number=0,Type=Flag,Description="Variant is Clinical(LSDB,OMIM,TPA,Diagnostic)">
##INFO=<ID=DSS,Number=0,Type=Flag,Description="In donor splice-site FxnCode = 75">
##INFO=<ID=G5,Number=0,Type=Flag,Description=">5% minor allele frequency in 1+ populations">
##INFO=<ID=G5A,Number=0,Type=Flag,Description=">5% minor allele frequency in each and all populations">
##INFO=<ID=GCF,Number=0,Type=Flag,Description="Has Genotype Conflict Same (rs, ind), different genotype. N/N is not included.">
##INFO=<ID=GENEINFO,Number=1,Type=String,Description="Pairs each of gene symbol:gene id. The gene symbol and id are delimited by a colon (:) and each pair is delimited by a vertical bar (|)">
##INFO=<ID=GMAF,Number=1,Type=Float,Description="Global Minor Allele Frequency [0, 0.5]; global population is 1000GenomesProject phase 1 genotype data from 629 individuals, released in the 08-04-2010 dataset">
##INFO=<ID=GNO,Number=0,Type=Flag,Description="Genotypes available. The variant has individual genotype (in SubInd table).">
##INFO=<ID=HD,Number=0,Type=Flag,Description="Marker is on high density genotyping kit (50K density or greater). The variant may have phenotype associations present in dbGaP.">
##INFO=<ID=INT,Number=0,Type=Flag,Description="In Intron FxnCode = 6">
##INFO=<ID=KGPROD,Number=0,Type=Flag,Description="1000 Genome production phase">
##INFO=<ID=KGPilot1,Number=0,Type=Flag,Description="1000 Genome discovery(pilot1) 2009">
##INFO=<ID=KGPilot123,Number=0,Type=Flag,Description="1000 Genome discovery all pilots 2010(1,2,3)">
##INFO=<ID=KGVAL,Number=0,Type=Flag,Description="1000 Genome validated by second method">
##INFO=<ID=LSD,Number=0,Type=Flag,Description="Submitted from a locus-specific database">
##INFO=<ID=MTP,Number=0,Type=Flag,Description="Microattribution/third-party annotation(TPA:GWAS,PAGE)">
##INFO=<ID=MUT,Number=0,Type=Flag,Description="Is mutation (journal citation, explicit fact): a low frequency variation that is cited in journal and other reputable sources">
##INFO=<ID=NOC,Number=0,Type=Flag,Description="Contig allele not present in variant allele list. The reference sequence allele at the mapped position is not present in the variant allele list, adjusted for orientation.">
##INFO=<ID=NOV,Number=0,Type=Flag,Description="Rs cluster has non-overlapping allele sets. True when rs set has more than 2 alleles from different submissions and these sets share no alleles in common.">
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
##INFO=<ID=NSF,Number=0,Type=Flag,Description="Has non-synonymous frameshift A coding region variation where one allele in the set changes all downstream amino acids. FxnClass = 44">
##INFO=<ID=NSM,Number=0,Type=Flag,Description="Has non-synonymous missense A coding region variation where one allele in the set changes protein peptide. FxnClass = 42">
##INFO=<ID=NSN,Number=0,Type=Flag,Description="Has non-synonymous nonsense A coding region variation where one allele in the set changes to STOP codon (TER). FxnClass = 41">
##INFO=<ID=OM,Number=0,Type=Flag,Description="Has OMIM/OMIA">
##INFO=<ID=OTH,Number=0,Type=Flag,Description="Has other variant with exactly the same set of mapped positions on NCBI refernce assembly.">
##INFO=<ID=PH1,Number=0,Type=Flag,Description="Phase 1 genotyped: filtered, non-redundant">
##INFO=<ID=PH2,Number=0,Type=Flag,Description="Phase 2 genotyped: filtered, non-redundant">
##INFO=<ID=PH3,Number=0,Type=Flag,Description="Phase 3 genotyped: filtered, non-redundant">
##INFO=<ID=PM,Number=0,Type=Flag,Description="Variant is Precious(Clinical,Pubmed Cited)">
##INFO=<ID=PMC,Number=0,Type=Flag,Description="Links exist to PubMed Central article">
##INFO=<ID=R3,Number=0,Type=Flag,Description="In 3' gene region FxnCode = 13">
##INFO=<ID=R5,Number=0,Type=Flag,Description="In 5' gene region FxnCode = 15">
##INFO=<ID=REF,Number=0,Type=Flag,Description="Has reference A coding region variation where one allele in the set is identical to the reference sequence. FxnCode = 8">
##INFO=<ID=RSPOS,Number=1,Type=Integer,Description="Chr position reported in dbSNP">
##INFO=<ID=RV,Number=0,Type=Flag,Description="RS orientation is reversed">
##INFO=<ID=S3D,Number=0,Type=Flag,Description="Has 3D structure - SNP3D table">
##INFO=<ID=SAO,Number=1,Type=Integer,Description="Variant Allele Origin: 0 - unspecified, 1 - Germline, 2 - Somatic, 3 - Both">
##INFO=<ID=SCS,Number=1,Type=Integer,Description="Variant Clinical Significance, 0 - unknown, 1 - untested, 2 - non-pathogenic, 3 - probable-non-pathogenic, 4 - probable-pathogenic, 5 - pathogenic, 6 - drug-response, 7 - histocompatibility, 255 - other">
##INFO=<ID=SLO,Number=0,Type=Flag,Description="Has SubmitterLinkOut - From SNP->SubSNP->Batch.link_out">
##INFO=<ID=SSR,Number=1,Type=Integer,Description="Variant Suspect Reason Code, 0 - unspecified, 1 - Paralog, 2 - byEST, 3 - Para_EST, 4 - oldAlign, 5 - other">
##INFO=<ID=SYN,Number=0,Type=Flag,Description="Has synonymous A coding region variation where one allele in the set does not change the encoded amino acid. FxnCode = 3">
##INFO=<ID=TPA,Number=0,Type=Flag,Description="Provisional Third Party Annotation(TPA) (currently rs from PHARMGKB who will give phenotype data)">
##INFO=<ID=U3,Number=0,Type=Flag,Description="In 3' UTR Location is in an untranslated region (UTR). FxnCode = 53">
##INFO=<ID=U5,Number=0,Type=Flag,Description="In 5' UTR Location is in an untranslated region (UTR). FxnCode = 55">
##INFO=<ID=VC,Number=1,Type=String,Description="Variation Class">
##INFO=<ID=VLD,Number=0,Type=Flag,Description="Is Validated. This bit is set if the variant has 2+ minor allele count based on frequency or genotype data.">
##INFO=<ID=VP,Number=1,Type=String,Description="Variation Property">
##INFO=<ID=WGT,Number=1,Type=Integer,Description="Weight, 00 - unmapped, 1 - weight 1, 2 - weight 2, 3 - weight 3 or more">
##INFO=<ID=WTD,Number=0,Type=Flag,Description="Is Withdrawn by submitter If one member ss is withdrawn by submitter, then this bit is set. If all member ss' are withdrawn, then the rs is deleted to SNPHistory">
##INFO=<ID=dbSNPBuildID,Number=1,Type=Integer,Description="First dbSNP Build for RS">
##LeftAlignVariants="analysis_type=LeftAlignVariants input_file=[] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/humgen/gsa-hpprojects/GATK/bundle/current/b37/human_g1k_v37.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false disable_experimental_low_memory_sharding=false logging_level=INFO log_to_file=null help=false variant=(RodBinding name=variant source=00-All.vcf) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub filter_mismatching_base_and_quals=false"
##contig=<ID=chr1,length=249250621,assembly=b37>
##phasing=partial
##reference=GRCh37.3
##reference=file:///humgen/gsa-hpprojects/GATK/bundle/current/b37/human_g1k_v37.fasta
##source=dbSNP
##variationPropertyDocumentationUrl=ftp://ftp.ncbi.nlm.nih.gov/snp/specs/dbSNP_BitField_latest.pdf
#CHROM POS ID REF ALT QUAL FILTER INFO
chr1 10144 rs144773400 TA T . PASS ASP;RSPOS=10145;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=134
chr1 10228 rs143255646 TA T . PASS ASP;RSPOS=10229;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=134
chr1 10234 rs145599635 C T . PASS ASP;RSPOS=10234;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 10248 rs148908337 A T . PASS ASP;RSPOS=10248;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 10254 rs140194106 TA T . PASS ASP;RSPOS=10255;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=134
chr1 10291 rs145427775 C T . PASS ASP;RSPOS=10291;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 10327 rs112750067 T C . PASS ASP;GENEINFO=LOC100652771:100652771;RSPOS=10327;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=132
chr1 10329 rs150969722 AC A . PASS ASP;RSPOS=10330;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=134
chr1 10351 rs145072688 CTA C,CA . PASS ASP;RSPOS=10352;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=134
chr1 10382 rs147093981 AAC A,AC . PASS ASP;RSPOS=10383;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=134
chr1 10433 rs56289060 A AC . PASS ASP;GENEINFO=LOC100652771:100652771;RSPOS=10433;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 10439 rs112766696 AC A . PASS ASP;GENEINFO=LOC100652771:100652771;GNO;RSPOS=10440;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000100000200;WGT=0;dbSNPBuildID=132
chr1 10439 rs138941843 AC A . PASS ASP;RSPOS=10440;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=134
chr1 10440 rs112155239 C A . PASS ASP;GENEINFO=LOC100652771:100652771;RSPOS=10440;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=132
chr1 10492 rs55998931 C T . PASS ASP;GENEINFO=LOC100652771:100652771;GMAF=0.0617001828153565;RSPOS=10492;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040000000100;WGT=0;dbSNPBuildID=129
chr1 10519 rs62636508 G C . PASS ASP;GENEINFO=LOC100652771:100652771;RSPOS=10519;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=129
chr1 10583 rs58108140 G A . PASS ASP;GENEINFO=LOC100652771:100652771;GMAF=0.270566727605119;KGPilot123;RSPOS=10583;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040010000100;WGT=0;dbSNPBuildID=129
chr1 10611 rs189107123 C G . PASS KGPilot123;RSPOS=10611;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 10828 rs10218492 G A . PASS ASP;GENEINFO=LOC100652771:100652771;RSPOS=10828;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=119
chr1 10904 rs10218493 G A . PASS ASP;GENEINFO=LOC100652771:100652771;GNO;RSPOS=10904;SAO=0;SSR=0;VC=SNV;VP=050000000004000100000100;WGT=0;dbSNPBuildID=119
chr1 10927 rs10218527 A G . PASS ASP;GENEINFO=LOC100652771:100652771;RSPOS=10927;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=119
chr1 10938 rs28853987 G A . PASS ASP;GENEINFO=LOC100652771:100652771;RSPOS=10938;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=125
chr1 11014 rs28484712 G A . PASS ASP;GENEINFO=LOC100652771:100652771;RSPOS=11014;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=125
chr1 11022 rs28775022 G A . PASS ASP;GENEINFO=LOC100652771:100652771;RSPOS=11022;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=125
chr1 11081 rs10218495 G T . PASS CFL;GENEINFO=LOC100652771:100652771;GNO;RSPOS=11081;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=119
chr1 11863 rs187669455 C A . PASS RSPOS=11863;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=135
chr1 13302 rs180734498 C T . PASS KGPilot123;RSPOS=13302;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 13327 rs144762171 G C . PASS ASP;KGPilot123;RSPOS=13327;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 13684 rs71260404 C T . PASS GENEINFO=LOC100652771:100652771;GNO;RSPOS=13684;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000000000100000100;WGT=0;dbSNPBuildID=130
chr1 13980 rs151276478 T C . PASS ASP;KGPilot123;RSPOS=13980;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 14889 rs142444908 G A . PASS ASP;RSPOS=14889;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 14907 rs79585140 A G . PASS GNO;RSPOS=14907;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040100000100;WGT=0;dbSNPBuildID=131
chr1 14930 rs75454623 A G . PASS GNO;RSPOS=14930;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040100000100;WGT=0;dbSNPBuildID=131
chr1 14976 rs71252251 G A . PASS ASP;GNO;RSPOS=14976;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000100000100;WGT=0;dbSNPBuildID=130
chr1 15061 rs71268703 T TG . PASS ASP;GNO;RSPOS=15061;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000100000200;WGT=0;dbSNPBuildID=130
chr1 15118 rs71252250 A G . PASS ASP;GNO;RSPOS=15118;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000100000100;WGT=0;dbSNPBuildID=130
chr1 15211 rs144718396 T G . PASS ASP;RSPOS=15211;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 15211 rs78601809 T G . PASS ASP;GNO;RSPOS=15211;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040100000100;WGT=0;dbSNPBuildID=131
chr1 16257 rs78588380 G C . PASS ASP;GNO;RSPOS=16257;SAO=0;SSR=0;VC=SNV;VP=050000000004000100000100;WGT=0;dbSNPBuildID=131
chr1 16378 rs148220436 T C . PASS ASP;RSPOS=16378;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 16495 rs141130360 G C . PASS ASP;RSPOS=16495;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 16497 rs150723783 A G . PASS ASP;RSPOS=16497;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 17519 rs192890528 G T . PASS RSPOS=17519;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=135
chr1 19226 rs138930629 T A . PASS ASP;RSPOS=19226;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 20141 rs56336884 G A . PASS HD;RSPOS=20141;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000000000400000100;WGT=0;dbSNPBuildID=129
chr1 20144 rs143346096 G A . PASS ASP;RSPOS=20144;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 20206 rs71262675 C T . PASS GNO;RSPOS=20206;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000000000100000100;WGT=0;dbSNPBuildID=130
chr1 20245 rs71262674 G A . PASS GMAF=0.256398537477148;GNO;RSPOS=20245;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000000000100000100;WGT=0;dbSNPBuildID=130
chr1 20304 rs71262673 G C . PASS GMAF=0.338208409506399;GNO;RSPOS=20304;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000000000100000100;WGT=0;dbSNPBuildID=130
chr1 26999 rs147506580 A G . PASS ASP;RSPOS=26999;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 29436 rs2462493 G A . PASS GNO;RSPOS=29436;SAO=0;SSR=0;VC=SNV;VP=050000000000000100000100;WGT=0;dbSNPBuildID=100
chr1 30923 rs140337953 G T . PASS ASP;KGPilot123;RSPOS=30923;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 33487 rs77459554 C T . PASS ASP;GNO;RSPOS=33487;SAO=0;SSR=0;VC=SNV;VP=050000000004000100000100;WGT=0;dbSNPBuildID=131
chr1 33495 rs75468675 C T . PASS ASP;GNO;RSPOS=33495;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040100000100;WGT=0;dbSNPBuildID=131
chr1 33505 rs75627161 T C . PASS ASP;GNO;RSPOS=33505;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040100000100;WGT=0;dbSNPBuildID=131
chr1 33508 rs75609629 A T . PASS ASP;GNO;RSPOS=33508;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040100000100;WGT=0;dbSNPBuildID=131
chr1 33521 rs76098219 T A . PASS GNO;RSPOS=33521;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040100000100;WGT=0;dbSNPBuildID=131
chr1 33593 rs557585 G A . PASS RSPOS=33593;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=83
chr1 33648 rs62028204 G T . PASS RSPOS=33648;RV;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=129
chr1 33656 rs113821789 T C . PASS RSPOS=33656;RV;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=132
chr1 51476 rs187298206 T C . PASS KGPilot123;RSPOS=51476;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 51479 rs116400033 T A . PASS ASP;G5;G5A;GMAF=0.113802559414991;KGPilot123;RSPOS=51479;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004070010000100;WGT=0;dbSNPBuildID=132
chr1 51803 rs62637812 T C . PASS GMAF=0.468921389396709;RSPOS=51803;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040000000100;WGT=0;dbSNPBuildID=129
chr1 51898 rs76402894 C A . PASS GMAF=0.0731261425959781;GNO;RSPOS=51898;SAO=0;SSR=0;VC=SNV;VP=050000000000000100000100;WGT=0;dbSNPBuildID=131
chr1 51914 rs190452223 T G . PASS KGPilot123;RSPOS=51914;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 51928 rs78732933 G A . PASS GNO;RSPOS=51928;SAO=0;SSR=0;VC=SNV;VP=050000000000000100000100;WGT=0;dbSNPBuildID=131
chr1 51935 rs181754315 C T . PASS KGPilot123;RSPOS=51935;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 51954 rs185832753 G C . PASS KGPilot123;RSPOS=51954;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 52058 rs62637813 G C . PASS GMAF=0.0342778793418647;KGPilot123;RSPOS=52058;SAO=0;SSR=1;VC=SNV;VLD;VP=050000000000040010000140;WGT=0;dbSNPBuildID=129
chr1 52144 rs190291950 T A . PASS KGPilot123;RSPOS=52144;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 52238 rs150021059 T G . PASS ASP;KGPilot123;RSPOS=52238;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 54353 rs140052487 C A . PASS ASP;KGPilot123;RSPOS=54353;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 54421 rs146477069 A G . PASS ASP;KGPilot123;RSPOS=54421;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 54490 rs141149254 G A . PASS ASP;KGPilot123;RSPOS=54490;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 54676 rs2462492 C T . PASS ASP;GMAF=0.191956124314442;GNO;HD;KGPilot123;RSPOS=54676;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040510000100;WGT=0;dbSNPBuildID=100
chr1 54753 rs143174675 T G . PASS ASP;KGPilot123;RSPOS=54753;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 54788 rs59861892 CC C,CCT . PASS ASP;RSPOS=54789;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 54795 rs58014817 T A . PASS ASP;RSPOS=54795;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=129
chr1 55164 rs3091274 C A . PASS G5;G5A;GMAF=0.145338208409506;GNO;KGPilot123;RSPOS=55164;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000000030110000100;WGT=0;dbSNPBuildID=103
chr1 55299 rs10399749 C T . PASS G5;G5A;GMAF=0.278793418647166;GNO;KGPilot123;PH2;RSPOS=55299;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000000030112000100;WGT=0;dbSNPBuildID=119
chr1 55302 rs3091273 C T . PASS RSPOS=55302;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=103
chr1 55313 rs182462964 A T . PASS KGPilot123;RSPOS=55313;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 55322 rs3107974 C T . PASS RSPOS=55322;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=103
chr1 55326 rs3107975 T C . PASS GNO;HD;KGPilot123;RSPOS=55326;SAO=0;SSR=0;VC=SNV;VP=050000000000000510000100;WGT=0;dbSNPBuildID=103
chr1 55330 rs185215913 G A . PASS KGPilot123;RSPOS=55330;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 55367 rs190850374 G A . PASS KGPilot123;RSPOS=55367;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 55388 rs182711216 C T . PASS KGPilot123;RSPOS=55388;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 55394 rs2949420 T A . PASS GNO;KGPilot123;PH2;RSPOS=55394;SAO=0;SSR=0;VC=SNV;VP=050000000000000112000100;WGT=0;dbSNPBuildID=101
chr1 55416 rs193242050 G A . PASS KGPilot123;RSPOS=55416;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 55427 rs183189405 T C . PASS KGPilot123;RSPOS=55427;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 55545 rs28396308 C T . PASS GNO;RSPOS=55545;SAO=0;SSR=0;VC=SNV;VP=050000000000000100000100;WGT=0;dbSNPBuildID=125
chr1 55816 rs187434873 G A . PASS KGPilot123;RSPOS=55816;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 55850 rs191890754 C G . PASS KGPilot123;RSPOS=55850;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 55852 rs184233019 G C . PASS KGPilot123;RSPOS=55852;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 56644 rs143342222 A C . PASS ASP;KGPilot123;RSPOS=56644;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 57952 rs189727433 A C . PASS KGPilot123;RSPOS=57952;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 58771 rs140128481 T C . PASS ASP;RSPOS=58771;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
chr1 58814 rs114420996 G A . PASS ASP;G5;GMAF=0.0982632541133455;KGPilot123;RSPOS=58814;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004050010000100;WGT=0;dbSNPBuildID=132
chr1 59040 rs149755937 T C . PASS ASP;KGPilot123;RSPOS=59040;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 60718 rs78395614 G A . PASS CFL;GNO;RSPOS=60718;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
chr1 60726 rs192328835 C A . PASS KGPilot123;RSPOS=60726;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 60791 rs76199781 A G . PASS CFL;GNO;RSPOS=60791;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
chr1 61442 rs74970982 A G . PASS CFL;GMAF=0.076782449725777;GNO;KGPilot123;RSPOS=61442;SAO=0;SSR=0;VC=SNV;VP=050000000008000110000100;WGT=0;dbSNPBuildID=131
chr1 61462 rs56992750 T A . PASS CFL;G5;G5A;GMAF=0.0383912248628885;GNO;KGPilot123;RSPOS=61462;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008030110000100;WGT=0;dbSNPBuildID=129
chr1 61480 rs75526266 G C . PASS CFL;GNO;RSPOS=61480;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
chr1 61499 rs75719746 G A . PASS CFL;GNO;RSPOS=61499;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
chr1 61743 rs184286948 G C . PASS KGPilot123;RSPOS=61743;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 61920 rs62637820 G A . PASS CFL;GMAF=0.0255941499085923;RSPOS=61920;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040000000100;WGT=0;dbSNPBuildID=129
chr1 61987 rs76735897 A G . PASS CFL;GMAF=0.292961608775137;GNO;KGPilot123;RSPOS=61987;SAO=0;SSR=0;VC=SNV;VP=050000000008000110000100;WGT=0;dbSNPBuildID=131
chr1 61989 rs77573425 G C . PASS CFL;GMAF=0.309414990859232;GNO;KGPilot123;RSPOS=61989;SAO=0;SSR=0;VC=SNV;VP=050000000008000110000100;WGT=0;dbSNPBuildID=131
chr1 61993 rs190553843 C T . PASS KGPilot123;RSPOS=61993;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 62156 rs181864839 C T . PASS KGPilot123;RSPOS=62156;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 62157 rs10399597 G A . PASS CFL;GMAF=0.00228519195612431;KGPilot123;RSPOS=62157;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040010000100;WGT=0;dbSNPBuildID=119
chr1 62162 rs140556834 G A . PASS ASP;KGPilot123;RSPOS=62162;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 62203 rs28402963 T C . PASS CFL;KGPilot123;RSPOS=62203;SAO=0;SSR=0;VC=SNV;VP=050000000008000010000100;WGT=0;dbSNPBuildID=125
chr1 62271 rs28599927 A G . PASS CFL;GMAF=0.138482632541133;RSPOS=62271;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040000000100;WGT=0;dbSNPBuildID=125
chr1 63268 rs75478250 T C . PASS CFL;GNO;RSPOS=63268;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
chr1 63276 rs185977555 G A . PASS KGPilot123;RSPOS=63276;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 63297 rs188886746 G A . PASS KGPilot123;RSPOS=63297;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 63671 rs116440577 G A . PASS ASP;G5;GMAF=0.170018281535649;KGPilot123;RSPOS=63671;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004050010000100;WGT=0;dbSNPBuildID=132
chr1 63737 rs77426996 TACT T,TCTA . PASS CFL;RSPOS=63738;SAO=0;SSR=0;VC=DIV;VP=050000000008000000000200;WGT=0;dbSNPBuildID=131
chr1 64649 rs181431124 A C . PASS KGPilot123;RSPOS=64649;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 66008 rs2691286 C G . PASS CFL;GNO;RSPOS=66008;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000100000100;WGT=0;dbSNPBuildID=100
chr1 66162 rs62639105 A T . PASS CFL;GMAF=0.320383912248629;GNO;KGPilot123;RSPOS=66162;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000110000100;WGT=0;dbSNPBuildID=129
chr1 66176 rs28552463 T A . PASS CFL;GMAF=0.0484460694698355;KGPilot123;RSPOS=66176;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040010000100;WGT=0;dbSNPBuildID=125
chr1 66219 rs181028663 A T . PASS KGPilot123;RSPOS=66219;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 66238 rs113961546 T A . PASS CFL;GNO;RSPOS=66238;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000100000100;WGT=0;dbSNPBuildID=132
chr1 66314 rs28534012 T A . PASS CFL;RSPOS=66314;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=125
chr1 66331 rs186063952 A C . PASS KGPilot123;RSPOS=66331;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 66334 rs28464214 T A . PASS CFL;RSPOS=66334;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=125
chr1 66442 rs192044252 T A . PASS KGPilot123;RSPOS=66442;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 66457 rs13328655 T A . PASS CFL;GMAF=0.0795246800731261;KGPilot123;RSPOS=66457;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040010000100;WGT=0;dbSNPBuildID=121
chr1 66503 rs112350669 T A . PASS CFL;RSPOS=66503;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=132
chr1 66507 rs12401368 T A . PASS CFL;GMAF=0.479890310786106;KGPilot123;RSPOS=66507;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040010000100;WGT=0;dbSNPBuildID=120
chr1 66651 rs2257270 A T . PASS CFL;GNO;RSPOS=66651;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=100
chr1 67179 rs149952626 C G . PASS ASP;KGPilot123;RSPOS=67179;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 67181 rs77662731 A G . PASS ASP;G5;G5A;GENEINFO=OR4F5:79501;GMAF=0.0470749542961609;GNO;KGPilot123;RSPOS=67181;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004070110000100;WGT=0;dbSNPBuildID=131
chr1 67223 rs78676975 C A . PASS ASP;GENEINFO=OR4F5:79501;GNO;RSPOS=67223;SAO=0;SSR=0;VC=SNV;VP=050000000004000100000100;WGT=0;dbSNPBuildID=131
chr1 69428 rs140739101 T G . PASS ASP;RSPOS=69428;S3D;SAO=0;SSR=0;VC=SNV;VLD;VP=050200000004040000000100;WGT=0;dbSNPBuildID=134
chr1 69453 rs142004627 G A . PASS ASP;RSPOS=69453;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000004000000000100;WGT=0;dbSNPBuildID=134
chr1 69476 rs148502021 T C . PASS ASP;RSPOS=69476;S3D;SAO=0;SSR=0;VC=SNV;VLD;VP=050200000004040000000100;WGT=0;dbSNPBuildID=134
chr1 69496 rs150690004 G A . PASS ASP;RSPOS=69496;S3D;SAO=0;SSR=0;VC=SNV;VLD;VP=050200000004040000000100;WGT=0;dbSNPBuildID=134
chr1 69511 rs75062661 A G . PASS GENEINFO=OR4F5:79501;GMAF=0.193784277879342;GNO;KGPilot123;RSPOS=69511;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000000000110000100;WGT=0;dbSNPBuildID=131
chr1 69534 rs190717287 T C . PASS KGPilot123;RSPOS=69534;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000000000010000100;WGT=0;dbSNPBuildID=135
chr1 69552 rs55874132 G C . PASS GENEINFO=OR4F5:79501;HD;RSPOS=69552;S3D;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050300000000040400000100;WGT=0;dbSNPBuildID=129
chr1 69590 rs141776804 T A . PASS ASP;RSPOS=69590;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000004000000000100;WGT=0;dbSNPBuildID=134
chr1 69594 rs144967600 T C . PASS ASP;RSPOS=69594;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000004000000000100;WGT=0;dbSNPBuildID=134
chr1 72148 rs182862337 C T . PASS KGPilot123;RSPOS=72148;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 73841 rs143773730 C T . PASS ASP;KGPilot123;RSPOS=73841;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 74651 rs62641291 G A . PASS RSPOS=74651;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=129
chr1 74681 rs13328683 G T . PASS CFL;GMAF=0.286106032906764;RSPOS=74681;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040000000100;WGT=0;dbSNPBuildID=121
chr1 74709 rs62641292 T A . PASS CFL;RSPOS=74709;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=129
chr1 74771 rs13328675 A G . PASS CFL;RSPOS=74771;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=121
chr1 74790 rs13328700 C G . PASS CFL;RSPOS=74790;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=121
chr1 74792 rs13328684 G A . PASS CFL;RSPOS=74792;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=121
chr1 77462 rs188023513 G A . PASS KGPilot123;RSPOS=77462;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 77470 rs192898053 T C . PASS KGPilot123;RSPOS=77470;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 77874 rs184538873 G A . PASS KGPilot123;RSPOS=77874;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 77961 rs78385339 G A . PASS GMAF=0.125685557586837;KGPilot123;RSPOS=77961;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040010000100;WGT=0;dbSNPBuildID=131
chr1 79033 rs62641298 A G . PASS GMAF=0.438299817184644;GNO;HD;KGPilot123;RSPOS=79033;SAO=0;SSR=0;VC=SNV;VP=050000000000000510000100;WGT=0;dbSNPBuildID=129
chr1 79050 rs62641299 G T . PASS GMAF=0.224405850091408;GNO;KGPilot123;RSPOS=79050;SAO=0;SSR=0;VC=SNV;VP=050000000000000110000100;WGT=0;dbSNPBuildID=129
chr1 79137 rs143777184 A T . PASS ASP;KGPilot123;RSPOS=79137;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 79417 rs184768190 C T . PASS KGPilot123;RSPOS=79417;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 79418 rs2691296 G C . PASS GMAF=0.0178244972577697;RSPOS=79418;RV;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000000040000000100;WGT=0;dbSNPBuildID=100
chr1 79538 rs2691295 C T . PASS RSPOS=79538;RV;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=100
chr1 79772 rs147215883 C G . PASS ASP;KGPilot123;RSPOS=79772;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 79872 rs189224661 T G . PASS KGPilot123;RSPOS=79872;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 80323 rs3942603 G C . PASS CFL;GNO;RSPOS=80323;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000100000100;WGT=0;dbSNPBuildID=108
chr1 80386 rs3878915 C A . PASS GMAF=0.0118829981718464;RSPOS=80386;RV;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000000040000000100;WGT=0;dbSNPBuildID=108
chr1 80454 rs144226842 G C . PASS ASP;KGPilot123;RSPOS=80454;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 81836 rs2259560 A T . PASS ASP;GNO;RSPOS=81836;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000100000100;WGT=0;dbSNPBuildID=100
chr1 81949 rs181567186 T C . PASS KGPilot123;RSPOS=81949;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 81962 rs4030308 T TAA . PASS ASP;RSPOS=81962;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000000000200;WGT=0;dbSNPBuildID=108
chr1 82102 rs4030307 C T . PASS ASP;RSPOS=82102;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=108
chr1 82103 rs2020400 T C . PASS ASP;RSPOS=82103;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=92
chr1 82126 rs1815133 C T . PASS ASP;RSPOS=82126;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=92
chr1 82133 rs4030306 CA C,CAAAAAAAAAAAAAAA . PASS ASP;RSPOS=82136;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000000000200;WGT=0;dbSNPBuildID=108
chr1 82154 rs4477212 A G . PASS ASP;HD;RSPOS=82154;SAO=0;SSR=0;VC=SNV;VP=050000000004000400000100;WGT=0;dbSNPBuildID=111
chr1 82162 rs1815132 C A . PASS ASP;GMAF=0.0351919561243144;GNO;RSPOS=82162;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000100000100;WGT=0;dbSNPBuildID=92
chr1 82163 rs139113303 G A . PASS ASP;KGPilot123;RSPOS=82163;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 82196 rs112844054 A T . PASS ASP;RSPOS=82196;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=132
chr1 82249 rs1851945 A G . PASS ASP;GMAF=0.0452468007312614;KGPilot123;RSPOS=82249;RV;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000004040010000100;WGT=0;dbSNPBuildID=92
chr1 82282 rs3871775 G A . PASS ASP;RSPOS=82282;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=108
chr1 82303 rs3871776 T C . PASS ASP;RSPOS=82303;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=108
chr1 82316 rs4030305 A C . PASS ASP;GNO;RSPOS=82316;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000100000100;WGT=0;dbSNPBuildID=108
chr1 82609 rs149189449 C G . PASS ASP;KGPilot123;RSPOS=82609;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
chr1 82676 rs185237834 T G . PASS KGPilot123;RSPOS=82676;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 82734 rs4030331 T C . PASS ASP;GMAF=0.261882998171846;KGPilot123;RSPOS=82734;RV;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000004040010000100;WGT=0;dbSNPBuildID=108
chr1 82957 rs189774606 C T . PASS KGPilot123;RSPOS=82957;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 83084 rs181193408 T A . PASS KGPilot123;RSPOS=83084;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 83088 rs186081601 G C . PASS KGPilot123;RSPOS=83088;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 83107 rs4405097 G C . PASS ASP;RSPOS=83107;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=111
chr1 83119 rs4030324 AA A,ATAAC . PASS ASP;RSPOS=83120;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000000000200;WGT=0;dbSNPBuildID=108
chr1 83771 rs189906733 T G . PASS KGPilot123;RSPOS=83771;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 83786 rs58520670 T TA . PASS ASP;RSPOS=83794;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 83815 rs58857344 GAGAA G . PASS ASP;RSPOS=83827;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 83826 rs71281475 AAAGA A,AAA . PASS ASP;GNO;RSPOS=83827;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000100000200;WGT=0;dbSNPBuildID=130
chr1 83855 rs59596480 GAA G . PASS ASP;RSPOS=83857;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 83872 rs59556914 AA A,AAGA . PASS ASP;RSPOS=83873;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 83884 rs59586754 GAAA G . PASS ASP;RSPOS=83885;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 83897 rs61330047 GAA G . PASS ASP;RSPOS=83899;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 83901 rs58254183 GAAAGAA G . PASS ASP;RSPOS=83903;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 83921 rs61338823 GAA G . PASS ASP;RSPOS=83923;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 83930 rs71281474 AG A,AGA . PASS ASP;GNO;RSPOS=83931;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000100000200;WGT=0;dbSNPBuildID=130
chr1 83934 rs59235392 AG A,AGAAA . PASS ASP;RSPOS=83935;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 83977 rs180759811 A G . PASS KGPilot123;RSPOS=83977;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 84002 rs28850140 G A . PASS ASP;GMAF=0.138939670932358;KGPilot123;RSPOS=84002;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040010000100;WGT=0;dbSNPBuildID=125
chr1 84010 rs186443818 G A . PASS KGPilot123;RSPOS=84010;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 84018 rs61352176 GAA G . PASS ASP;RSPOS=84020;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
chr1 84079 rs190867312 T C . PASS KGPilot123;RSPOS=84079;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 84139 rs183605470 A T . PASS KGPilot123;RSPOS=84139;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 84156 rs188652299 A C . PASS KGPilot123;RSPOS=84156;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 84244 rs191297051 A C . PASS KGPilot123;RSPOS=84244;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 84295 rs183209871 G A . PASS KGPilot123;RSPOS=84295;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 84346 rs187855973 T C . PASS KGPilot123;RSPOS=84346;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 84453 rs191379015 C G . PASS KGPilot123;RSPOS=84453;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
chr1 84705 rs183470350 T G . PASS KGPilot123;RSPOS=84705;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135