gatk-3.8/public/packages/PicardPrivate.xml

<?xml version="1.0" encoding="UTF-8"?>
<package name="picard-private-parts">
  <executable name="picard-private-parts">
    <dependencies>
      <class name="edu.mit.broad.picard.util.PicardAggregationFsUtil" />
      <class name="edu.mit.broad.picard.genotype.fingerprint.v2.FingerprintingSummaryMetrics" />
      <class name="edu.mit.broad.picard.genotype.concordance.DbSnpMatchMetrics" />
    </dependencies>
  </executable>
</package>
Extract and include only the Tim Fennell-approved parts of picard private. Hopefully this is a temporary solution and these classes will be migrated into picard-public. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2041 348d0f76-0448-11de-a6fe-93d51630548a 2009-11-14 03:42:33 +08:00			`<?xml version="1.0" encoding="UTF-8"?>`
Cleanup and formatting overhaul. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2652 348d0f76-0448-11de-a6fe-93d51630548a 2010-01-22 03:22:56 +08:00			`<package name="picard-private-parts">`
			`<executable name="picard-private-parts">`
Update packaging system to produce multiple jars if asked nicely. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2246 348d0f76-0448-11de-a6fe-93d51630548a 2009-12-04 01:11:12 +08:00			`<dependencies>`
Revert "Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable" This reverts commit 039a6bb01f345322ce2be50ae3634308bb24e77e, reversing changes made to b9c9973d1c638dfc9f8c19b5eb845e99844f9d29. 2011-07-20 06:38:53 +08:00			`<class name="edu.mit.broad.picard.util.PicardAggregationFsUtil" />`
Move fingerprinting metrics reader into our Picard private extract. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5990 348d0f76-0448-11de-a6fe-93d51630548a 2011-06-14 08:13:10 +08:00			`<class name="edu.mit.broad.picard.genotype.fingerprint.v2.FingerprintingSummaryMetrics" />`
Oops. Failed to add DbSnpMatchMetrics to Picard private jar. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5994 348d0f76-0448-11de-a6fe-93d51630548a 2011-06-14 23:14:19 +08:00			`<class name="edu.mit.broad.picard.genotype.concordance.DbSnpMatchMetrics" />`
Update packaging system to produce multiple jars if asked nicely. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2246 348d0f76-0448-11de-a6fe-93d51630548a 2009-12-04 01:11:12 +08:00			`</dependencies>`
			`</executable>`
Extract and include only the Tim Fennell-approved parts of picard private. Hopefully this is a temporary solution and these classes will be migrated into picard-public. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2041 348d0f76-0448-11de-a6fe-93d51630548a 2009-11-14 03:42:33 +08:00			`</package>`