45 lines
1.3 KiB
C
45 lines
1.3 KiB
C
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#ifndef LOAD_TIME_INITIALIZER_H
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#define LOAD_TIME_INITIALIZER_H
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#include "headers.h"
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#include <jni.h>
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class LoadTimeInitializer
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{
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public:
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LoadTimeInitializer(); //will be called when library is loaded
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void print_profiling();
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void debug_dump(std::string filename, std::string s, bool to_append, bool add_newline=true);
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void debug_close();
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jfieldID m_readBasesFID;
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jfieldID m_readQualsFID;
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jfieldID m_insertionGOPFID;
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jfieldID m_deletionGOPFID;
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jfieldID m_overallGCPFID;
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jfieldID m_haplotypeBasesFID;
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//used to compute avg, variance of #testcases
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double m_sumNumReads;
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double m_sumSquareNumReads;
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double m_sumNumHaplotypes;
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double m_sumSquareNumHaplotypes;
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double m_sumNumTestcases;
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double m_sumSquareNumTestcases;
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uint64_t m_sumNumDoubleTestcases;
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double m_sumReadLengths;
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double m_sumHaplotypeLengths;
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double m_sumProductReadLengthHaplotypeLength;
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double m_sumSquareProductReadLengthHaplotypeLength;
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unsigned m_maxNumTestcases;
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unsigned m_num_invocations;
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//timing in nanoseconds
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uint64_t m_compute_time;
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uint64_t m_data_transfer_time;
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//bytes copied
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uint64_t m_bytes_copied;
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private:
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std::map<std::string, std::ofstream*> m_filename_to_fptr;
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};
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extern LoadTimeInitializer g_load_time_initializer;
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#endif
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