42 lines
1.2 KiB
Scala
42 lines
1.2 KiB
Scala
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package org.broadinstitute.sting.queue.engine
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import org.broadinstitute.sting.queue.function.InProcessFunction
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import org.broadinstitute.sting.queue.util.Logging
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/**
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* Runs a function that executes in process and does not fork out an external process.
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*/
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class InProcessRunner(function: InProcessFunction) extends JobRunner with Logging {
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private var runStatus: RunnerStatus.Value = _
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def start() = {
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if (logger.isDebugEnabled) {
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logger.debug("Starting: " + function.commandDirectory + " > " + function.description)
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} else {
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logger.info("Starting: " + function.description)
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}
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function.doneOutputs.foreach(_.delete)
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function.failOutputs.foreach(_.delete)
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runStatus = RunnerStatus.RUNNING
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try {
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function.run()
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function.doneOutputs.foreach(_.createNewFile)
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runStatus = RunnerStatus.DONE
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logger.info("Done: " + function.description)
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} catch {
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case e => {
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runStatus = RunnerStatus.FAILED
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try {
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function.failOutputs.foreach(_.createNewFile)
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} catch {
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case _ => /* ignore errors in the exception handler */
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}
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logger.error("Error: " + function.description, e)
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}
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}
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}
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def status = runStatus
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}
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