<?xml version="1.0" encoding="UTF-8"?>
<package name="GenomeAnalysisTK">
  <version file="StingText.properties" property="org.broadinstitute.sting.gatk.version" />
  <executable name="GenomeAnalysisTK">
    <main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
    <resource-bundle file="StingText.properties" />
    <modules>
      <module file="GATKEngine.xml"/>
    </modules>
  </executable>
  <modules>
    <module file="AnalyzeCovariates.xml"/>
  </modules>
  <resources>
    <!-- GATK sample code and build scripts -->
    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java" />
    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/PileupWalker.java" />
    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java" />
    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountLociWalker.java" />
    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReadsWalker.java" />
    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupWalker.java" />
  </resources>
  <release>
    <executable directory="/humgen/gsa-hpprojects/GATK/bin" symlink="current" />
    <archive directory="/web/ftp/pub/gsa/GenomeAnalysisTK" symlink="GenomeAnalysisTK-latest.tar.bz2" />
  </release>
</package>
