##:GATKReport.v0.1 CompOverlap : The overlap between eval and comp sites
CompOverlap  CompRod  EvalRod  JexlExpression  Novelty  nEvalVariants  nCompVariants  novelSites  nVariantsAtComp  compRate  nConcordant  concordantRate
CompOverlap  none     eval     none            all      0              0              0           0                0.00000000  0            0.00000000    
CompOverlap  none     eval     none            known    0              0              0           0                0.00000000  0            0.00000000    
CompOverlap  none     eval     none            novel    0              0              0           0                0.00000000  0            0.00000000    

##:GATKReport.v0.1 CountVariants : Counts different classes of variants in the sample
CountVariants  CompRod  EvalRod  JexlExpression  Novelty  nProcessedLoci  nCalledLoci  nRefLoci  nVariantLoci  variantRate  variantRatePerBp  nSNPs  nMNPs  nInsertions  nDeletions  nComplex  nNoCalls  nHets  nHomRef  nHomVar  nSingletons  heterozygosity  heterozygosityPerBp  hetHomRatio  indelRate  indelRatePerBp  deletionInsertionRatio
CountVariants  none     eval     none            all      100000          100000       100000    0             0.00000000   0.00000000        0      0      0            0           0         99872     0      128      0        0            0.00000000      0.00000000           0.00000000   0.00000000  0.00000000      0.00000000            
CountVariants  none     eval     none            known    100000          0            0         0             0.00000000   0.00000000        0      0      0            0           0         0         0      0        0        0            0.00000000      0.00000000           0.00000000   0.00000000  0.00000000      0.00000000            
CountVariants  none     eval     none            novel    100000          100000       100000    0             0.00000000   0.00000000        0      0      0            0           0         99872     0      128      0        0            0.00000000      0.00000000           0.00000000   0.00000000  0.00000000      0.00000000            

##:GATKReport.v0.1 SimpleMetricsByAC.metrics : TiTv by allele count
SimpleMetricsByAC.metrics  CompRod  EvalRod  JexlExpression  Novelty  row  AC  nTi  nTv  n  TiTv
SimpleMetricsByAC.metrics  none     eval     none            all      ac0  0   0    0    0  0.0 
SimpleMetricsByAC.metrics  none     eval     none            all      ac1  1   0    0    0  0.0 
SimpleMetricsByAC.metrics  none     eval     none            all      ac2  2   0    0    0  0.0 
SimpleMetricsByAC.metrics  none     eval     none            known    ac0  0   0    0    0  0.0 
SimpleMetricsByAC.metrics  none     eval     none            known    ac1  1   0    0    0  0.0 
SimpleMetricsByAC.metrics  none     eval     none            known    ac2  2   0    0    0  0.0 
SimpleMetricsByAC.metrics  none     eval     none            novel    ac0  0   0    0    0  0.0 
SimpleMetricsByAC.metrics  none     eval     none            novel    ac1  1   0    0    0  0.0 
SimpleMetricsByAC.metrics  none     eval     none            novel    ac2  2   0    0    0  0.0 

##:GATKReport.v0.1 TiTvVariantEvaluator : Ti/Tv Variant Evaluator
TiTvVariantEvaluator  CompRod  EvalRod  JexlExpression  Novelty  nTi  nTv  tiTvRatio  nTiInComp  nTvInComp  TiTvRatioStandard
TiTvVariantEvaluator  none     eval     none            all      0    0    0.00000000  0          0          0.00000000       
TiTvVariantEvaluator  none     eval     none            known    0    0    0.00000000  0          0          0.00000000       
TiTvVariantEvaluator  none     eval     none            novel    0    0    0.00000000  0          0          0.00000000       

##:GATKReport.v0.1 ValidationReport : Assess site accuracy and sensitivity of callset against follow-up validation assay
ValidationReport  CompRod  EvalRod  JexlExpression  Novelty  nComp  TP  FP  FN  TN  sensitivity  PPV  FDR  CompMonoEvalNoCall  CompMonoEvalFiltered  CompMonoEvalMono  CompMonoEvalPoly  CompPolyEvalNoCall  CompPolyEvalFiltered  CompPolyEvalMono  CompPolyEvalPoly  CompFiltered  nDifferentAlleleSites
ValidationReport  none     eval     none            all      0      0   0   0   0   NaN          NaN  NaN  0                   0                     0                 0                 0                   0                     0                 0                 0             0                    
ValidationReport  none     eval     none            known    0      0   0   0   0   NaN          NaN  NaN  0                   0                     0                 0                 0                   0                     0                 0                 0             0                    
ValidationReport  none     eval     none            novel    0      0   0   0   0   NaN          NaN  NaN  0                   0                     0                 0                 0                   0                     0                 0                 0             0                    

