<?xml version="1.0" encoding="UTF-8"?>
<package name="AnalyzeCovariates">
  <executable name="AnalyzeCovariates">
    <main-class name="org.broadinstitute.sting.analyzecovariates.AnalyzeCovariates" />
    <resource-bundle file="StingText.properties" />
    <dependencies>
      <!-- Recalibration analysis script -->
      <class name="org.broadinstitute.sting.analyzecovariates.AnalyzeCovariates" />
      <package name="org.broadinstitute.sting.gatk.walkers.recalibration" />
      <!-- Supplemental scripts for graph generation, etc. -->
      <dir name="org/broadinstitute/sting/analyzecovariates" includes="**/*.R" />
    </dependencies>
  </executable>
</package>
