109 lines
11 KiB
Plaintext
109 lines
11 KiB
Plaintext
@SQ SN:1 LN:249250621
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@SQ SN:2 LN:243199373
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@SQ SN:3 LN:198022430
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@SQ SN:4 LN:191154276
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@SQ SN:5 LN:180915260
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@SQ SN:6 LN:171115067
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@SQ SN:7 LN:159138663
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@SQ SN:8 LN:146364022
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@SQ SN:9 LN:141213431
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@SQ SN:10 LN:135534747
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@SQ SN:11 LN:135006516
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@SQ SN:12 LN:133851895
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@SQ SN:13 LN:115169878
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@SQ SN:14 LN:107349540
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@SQ SN:15 LN:102531392
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@SQ SN:16 LN:90354753
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@SQ SN:17 LN:81195210
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@SQ SN:18 LN:78077248
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@SQ SN:19 LN:59128983
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@SQ SN:20 LN:63025520
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@SQ SN:21 LN:48129895
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@SQ SN:22 LN:51304566
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@SQ SN:X LN:155270560
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@SQ SN:Y LN:59373566
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@SQ SN:MT LN:16569
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@SQ SN:GL000207.1 LN:4262
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@SQ SN:GL000226.1 LN:15008
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@SQ SN:GL000229.1 LN:19913
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@SQ SN:GL000231.1 LN:27386
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@SQ SN:GL000210.1 LN:27682
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@SQ SN:GL000239.1 LN:33824
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@SQ SN:GL000235.1 LN:34474
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@SQ SN:GL000201.1 LN:36148
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@SQ SN:GL000247.1 LN:36422
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@SQ SN:GL000245.1 LN:36651
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@SQ SN:GL000197.1 LN:37175
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@SQ SN:GL000203.1 LN:37498
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@SQ SN:GL000246.1 LN:38154
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@SQ SN:GL000249.1 LN:38502
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@SQ SN:GL000196.1 LN:38914
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@SQ SN:GL000248.1 LN:39786
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@SQ SN:GL000244.1 LN:39929
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@SQ SN:GL000238.1 LN:39939
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@SQ SN:GL000202.1 LN:40103
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@SQ SN:GL000234.1 LN:40531
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@SQ SN:GL000232.1 LN:40652
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@SQ SN:GL000206.1 LN:41001
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@SQ SN:GL000240.1 LN:41933
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@SQ SN:GL000236.1 LN:41934
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@SQ SN:GL000241.1 LN:42152
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@SQ SN:GL000243.1 LN:43341
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@SQ SN:GL000242.1 LN:43523
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@SQ SN:GL000230.1 LN:43691
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@SQ SN:GL000237.1 LN:45867
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@SQ SN:GL000233.1 LN:45941
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@SQ SN:GL000204.1 LN:81310
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@SQ SN:GL000198.1 LN:90085
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@SQ SN:GL000208.1 LN:92689
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@SQ SN:GL000191.1 LN:106433
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@SQ SN:GL000227.1 LN:128374
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@SQ SN:GL000228.1 LN:129120
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@SQ SN:GL000214.1 LN:137718
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@SQ SN:GL000221.1 LN:155397
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@SQ SN:GL000209.1 LN:159169
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@SQ SN:GL000218.1 LN:161147
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@SQ SN:GL000220.1 LN:161802
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@SQ SN:GL000213.1 LN:164239
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@SQ SN:GL000211.1 LN:166566
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@SQ SN:GL000199.1 LN:169874
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@SQ SN:GL000217.1 LN:172149
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@SQ SN:GL000216.1 LN:172294
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@SQ SN:GL000215.1 LN:172545
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@SQ SN:GL000205.1 LN:174588
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@SQ SN:GL000219.1 LN:179198
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@SQ SN:GL000224.1 LN:179693
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@SQ SN:GL000223.1 LN:180455
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@SQ SN:GL000195.1 LN:182896
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@SQ SN:GL000212.1 LN:186858
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@SQ SN:GL000222.1 LN:186861
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@SQ SN:GL000200.1 LN:187035
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@SQ SN:GL000193.1 LN:189789
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@SQ SN:GL000194.1 LN:191469
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@SQ SN:GL000225.1 LN:211173
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@SQ SN:GL000192.1 LN:547496
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@SQ SN:NC_007605 LN:171823
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@SQ SN:hs37d5 LN:35477943
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@HD VN:1.5 SO:unsorted GO:query
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@RG ID:normal SM:normal PL:illumina LB:normal PG:bwa
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@PG ID:bwa PN:bwa VN:0.7.17-r1198-dirty CL:./bwa mem -t 1 -M -R @RG\tID:normal\tSM:normal\tPL:illumina\tLB:normal\tPG:bwa /home/zzh/reference/human_g1k_v37_decoy.fasta /home/zzh/fastq/diff_r1.fq /home/zzh/fastq/diff_r2.fq -o ./out.sam
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A00289:748:HLCH3DSX3:4:1102:24749:34929 97 16 75642166 60 150M 12 66451372 0 AAAGCCATTGGCAGTAACATCCAAAGGCTGCTCAGGAACTGCACTCCAGCTGATGGCTATGAAAAGATAAGATTCTAGGGTTAAAACTGCTCAATTTCTTGTGAAAGTCAGAAGTATTTTAATAAAAATATTTCTCTGACTCTACAGACC FFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFF: NM:i:0 MD:Z:150 MC:Z:17S91M42S AS:i:150 XS:i:0 RG:Z:normal
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A00289:748:HLCH3DSX3:4:1102:24749:34929 145 12 66451372 0 17S91M42S 16 75642166 0 TTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAATAATTCTTTGTGAAACCCCT F,F,FFF,:FFF,,F,F,,F,F:,FFF:F:FFF:FFFFFFF:F,F,F,FFFFFF::,,FFFFFFF,:F,:,F,::,,F:FF:,FF:F::F::FFFFFFFFFF,F:F,FFFF,FFFFF,FF,F,,F,F,,,,,,:,,,,,,,,,,,,,,,F NM:i:0 MD:Z:91 MC:Z:150M AS:i:91 XS:i:90 RG:Z:normal SA:Z:12,49106363,+,117S33M,0,0; XA:Z:12,-66451373,35S90M25S,0;12,-66451373,28S90M32S,0;6,-160521757,23S83M44S,0;15,-77910871,23S79M48S,0;
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A00289:748:HLCH3DSX3:4:1102:24749:34929 385 12 49106363 0 117H33M 16 75642166 0 AAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAA FFF:F:FFF,:F,F,,F,F,,FFF:,FFF,F,F NM:i:0 MD:Z:33 MC:Z:150M AS:i:33 XS:i:32 RG:Z:normal SA:Z:12,66451372,-,17S91M42S,0,0; XA:Z:4,-19079503,32M118S,0;15,-55218248,32M118S,0;X,-149551159,32M118S,0;
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A00289:748:HLCH3DSX3:4:1104:6234:8656 113 12 66451373 8 12S91M47S 22 18873826 0 TTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTTTTTTTTTTTTTGGGGGGGGGGGGGGGTGAGGTGGTCTGTG ,,:FFF:,:,::,,,,,,FF,FFF,,FF,F,FFF:,,:FFFFFF:FFF,:,:FF:F:::::FFF::,::F:FFFFFF:,FFFF,,,:FFFFFFFF:,,::,,,,,:,,FFF:,,,FF:F,:,FFFF:F::,,FF:,:FFFFFF:FFFFFF NM:i:1 MD:Z:13T77 MC:Z:150M AS:i:86 XS:i:81 RG:Z:normal SA:Z:3,121668661,-,89S32M29S,0,0; XA:Z:12,-66451372,25S91M34S,2;6,-160521757,19S84M47S,1;15,-77910874,26S77M47S,0;7,-107410599,25M1I3M15D74M47S,16;
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A00289:748:HLCH3DSX3:4:1104:6234:8656 369 3 121668661 0 89H32M29H 22 18873826 0 TTTTTTTTTTTTTGTTTGTTTTTTTTTTTTTT FFFFFF:,,::,,,,,:,,FFF:,,,FF:F,: NM:i:0 MD:Z:32 MC:Z:150M AS:i:32 XS:i:32 RG:Z:normal SA:Z:12,66451373,-,12S91M47S,8,1;
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A00289:748:HLCH3DSX3:4:1104:6234:8656 177 22 18873826 22 150M 12 66451373 0 CTATACCCCACATCCTCATTCCCACCAGATGTCTTGGATCATGGAGGCTCTCCAGACAAAAGCCAGCAGTTAAGCTCCAGATTTCCTATAGAATCCTTTTCTAACAACCAGTGAGTGATTCCAGAATACGTACCATTGAATGTGCTCCCT FFF:FFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF NM:i:0 MD:Z:150 MC:Z:12S91M47S AS:i:150 XS:i:140 RG:Z:normal
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A00289:748:HLCH3DSX3:4:1104:1741:18129 97 11 113220686 60 150M 12 66451373 0 TATTTCACCCGGATGCTGACTCCTTTTTTGGTTTCCTTGCAAGGTTACCCTGTTGGGATGTTGTTAGTTGGAGGACAGCTACCTCTGAGGTTATTATGGTTTTTTGCAGATTATTGGAAGCGCTGGTGTCATTTCTTGATTTCTCGGATA FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFFFFFFFFFFFFFFF:FFFFFFF:FFFF NM:i:0 MD:Z:150 MC:Z:90M60S AS:i:150 XS:i:19 RG:Z:normal
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A00289:748:HLCH3DSX3:4:1104:1741:18129 145 12 66451373 7 90M60S 11 113220686 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTCCCAC FF:FFFF,F,,FFFFFFFF:FFFF:,F,,:F:F::::,F::::FFF::F::,,:FFF,:::FFFFFFFFFFF:FFFFFFFF,FFFF:FFF,:,:,,::FFFFFFFFFFF,FF:FFF:F:F:F:,F,,::F,,F,,FFFFF:F:,,,,,,, NM:i:1 MD:Z:81T8 MC:Z:150M AS:i:85 XS:i:81 RG:Z:normal SA:Z:8,112168232,-,79S59M12S,0,1; XA:Z:6,-160521757,81M69S,0;4,-82515382,13S69M68S,0;
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A00289:748:HLCH3DSX3:4:1104:1741:18129 401 8 112168232 0 79H59M12H 11 113220686 0 TTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTT FF,FFFF:FFF,:,:,,::FFFFFFFFFFF,FF:FFF:F:F:F:,F,,::F,,F,,FFF NM:i:1 MD:Z:46T12 MC:Z:150M AS:i:54 XS:i:53 RG:Z:normal SA:Z:12,66451373,-,90M60S,7,1;
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A00289:748:HLCH3DSX3:4:1105:27281:29700 113 X 117117442 60 150M 12 66451372 0 CCCTGAAGTTGATTTTTTGAATATATCCTTGAAATCGGCTTGTTTTAATGACAATTGCCTCCGTCTCCTGAAAGTGGAGTGCAAAAAGAAACCTGGTTAATTGTAGTTTTATTATATTTAGTTCAAATTTTTCAAAGCATACCCTGACAG FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF NM:i:0 MD:Z:150 MC:Z:12S89M49S AS:i:150 XS:i:0 RG:Z:normal
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A00289:748:HLCH3DSX3:4:1105:27281:29700 177 12 66451372 0 12S89M49S X 117117442 0 TTTTTTAAAAATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTATTTATTTTTTTATTTTTTTATTATTTTTTTTTTTTTTTTTTTTTTTTTGGTGCCGCCCCC ,,,,:,,F:F,,,,:FF,F:FF,::F:F:F,,F::FFF,FFFFFFFFF,FFFFFF::FFF:F:FFFFFFF,FFFFFFF::FFFF:,:FF:,,F,:,FFFFF,:,,:F,,,,:,FFFFF:F,,FFF:FFFFF:,F,F,,,:,,,,,:FFFF NM:i:3 MD:Z:73T3T3T7 MC:Z:150M AS:i:74 XS:i:72 RG:Z:normal SA:Z:15,85942734,+,20S48M82S,0,1;
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A00289:748:HLCH3DSX3:4:1105:27281:29700 417 15 85942734 0 20H48M82H X 117117442 0 AAAAAAAAAAAAAAAAATAATAAAAAAATAAAAAAATAAATAAATAAA FFFF:FFF,,F:FFFFF,:,,,,F:,,:,FFFFF,:,F,,:FF:,:FF NM:i:1 MD:Z:17A30 MC:Z:150M AS:i:43 XS:i:36 RG:Z:normal SA:Z:12,66451372,-,12S89M49S,0,3; XA:Z:11,-118049564,69S35M7D34M12S,11;2,+204499190,12S31M1D21M86S,3;
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A00289:748:HLCH3DSX3:4:1106:2880:19288 97 4 169630630 0 29M1I4M1I68M9D22M25S 12 66451373 0 CAGCCTGGGTGACAGAGTGAGACTCCAGCTAAGGCAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAATGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGAGATCGGAAGAGCACACGTCTGAAC FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFF:FFF:FFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFF NM:i:14 MD:Z:18C8T59G13^AAGGAAGGA22 MC:Z:36S91M23S AS:i:73 XS:i:72 RG:Z:normal
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A00289:748:HLCH3DSX3:4:1106:2880:19288 145 12 66451373 9 36S91M23S 4 169630630 0 TATATACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGGTGGGTGGGTGGGTTGGCAG :,,,,,,,:FF:FFFF:,:FF:,F,F,FFF,,,FFF:FFFFFFFFF,:,,F:F,FFFF,:FFFFFFFFFFFFFFFFFFFF:FF:FFFF:FFFFFFF:FFF:FFFFFFF:FF,FFF:,:::,:F::,,:,,:,:,,,,,:,::,,,:F,FF NM:i:1 MD:Z:10T80 MC:Z:29M1I4M1I68M9D22M25S AS:i:86 XS:i:80 RG:Z:normal SA:Z:15,55218228,-,9S52M89S,0,0; XA:Z:15,-77910871,47S80M23S,0;6,-160521761,47S80M23S,0;6,-160521757,47S79M24S,0;7,-107410599,25S28M15D74M23S,16;
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A00289:748:HLCH3DSX3:4:1106:2880:19288 401 15 55218228 0 9H52M89H 4 169630630 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTT FF:FFFF:,:FF:,F,F,FFF,,,FFF:FFFFFFFFF,:,,F:F,FFFF,:F NM:i:0 MD:Z:52 MC:Z:29M1I4M1I68M9D22M25H AS:i:52 XS:i:50 RG:Z:normal SA:Z:12,66451373,-,36S91M23S,9,1;
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A00289:748:HLCH3DSX3:4:1107:2365:20462 97 22 18737670 0 150M 12 66451372 0 GAGGACACCATACAAGCCGTCGCTAACAAGGACACTGTACACAACATCGCTAATGACGGCACCGTACAAGACATCACCAATGAGGGCGCTTTATACGACATTGCTAATGATACCGACAAGGCACGCTAACGTGGACGCTGTACACGACAT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFF NM:i:0 MD:Z:150 MC:Z:21S90M39S AS:i:150 XS:i:150 RG:Z:normal
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A00289:748:HLCH3DSX3:4:1107:2365:20462 145 12 66451372 13 21S90M39S 22 18737670 0 TTTTATATATTTATATTTATTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTTTTTGTGGTGGGGGGGGGGTTTGGCATAGCAT F:F,,F,F,F:FFF,,,:,F:,:,,:,,,,:,F:,,FFFFFFFFFFFFF,F:FFFFFFFFF:FFFF,,FFFFF:FFF::FFFFF,F:F,,F:F,FFFFFFFF,:F:F::::,,:F,F,,F,:,,,,,::,,,,:,,:,,,,,,F,F::FF NM:i:0 MD:Z:90 MC:Z:150M AS:i:90 XS:i:84 RG:Z:normal XA:Z:6,-160521757,28S84M38S,0;15,-77910871,32S80M38S,0;7,-107410642,38S74M38S,0;
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A00289:748:HLCH3DSX3:4:1107:26377:28385 113 GL000220.1 122227 60 150M 6 160521757 0 TGCTCTGTTGCTCACGCTGGTCTCAAACTCCTGGCCTTGACGCTTCTCCCGTCACATCCGCCGTCTGGTTGTTGAAATGAGCATCTCTCGTAAAATGGAAAAGATGAAAGAAATAAACACGAAGACGGAAAGCACGGTGTGAACGTTTCT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF NM:i:0 MD:Z:150 MC:Z:85M65S AS:i:150 XS:i:113 RG:Z:normal
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A00289:748:HLCH3DSX3:4:1107:26377:28385 177 6 160521757 0 85M65S GL000220.1 122227 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGTTTTTTTTTTGTTGGGGGTTGGGTGTTGGGGGGCGGGGGGGGGGGCGCCCCCCCCCAAGGAGA F:FF,F,,F,F,FFFFFF,:FF,:FF:F,:FF,FFFF:FFF:FF,FFFFFFFFFFFFFFFFFFFFFFFF:FF,F,F:F,:FF,,,FFFF,F,:,,,,,:::,,:,,,,::,,,,,,,,,F,,FF,:F:,,F,,,,,FF:FF:F,FFFF:: NM:i:0 MD:Z:85 MC:Z:150M AS:i:85 XS:i:84 RG:Z:normal XA:Z:12,-66451380,84M66S,0;12,-66451373,83M67S,0;15,-77910871,4S80M66S,0;
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