fast-bwa/scripts/seed1.py

22 lines
406 B
Python
Executable File

#!/bin/env python3
import sys
import os
fn = sys.argv[1]
n_all = 0
n_2 = 0
n_intv1_len = 0
n_seed_len = 0
with open(fn, 'r') as f:
for line in f:
dat = line.strip().split('\t')
n_all += 1
if (len(dat) == 2):
n_2 += 1
n_intv1_len += int(dat[0])
n_seed_len += int(dat[1])
print(n_all, n_2, n_2 / n_all, n_intv1_len / n_2, n_seed_len / n_2)