27 lines
666 B
C
27 lines
666 B
C
/*
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Description: 通过fmt-idx数据结构对seed过程进行加速（fm-index twice search in one time）
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Copyright : All right reserved by ICT
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Author : Zhang Zhonghai
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Date : 2023/12/24
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*/
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#include <stdio.h>
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#include <stdlib.h>
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#include "fmt_idx.h"
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// 创建fmt-index索引数据
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void BuildBwtdFromBwt(bwt_t *bwt, bwtd_t **bwtd_p) {
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*bwtd_p = (bwtd_t *)malloc(sizeof(bwtd_t));
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bwtd_t *bwtd = *bwtd_p;
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const int baseLen = 12;
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const int kmerSize = 1 << (baseLen << 1);
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bwtd->kmer_range = (kmer_range_t *)malloc(kmerSize * sizeof(kmer_range_t));
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printf("kmer size: %ld M\n", kmerSize * sizeof(kmer_range_t) / 1024 / 1024);
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exit(0);
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} |