13 lines
319 B
Bash
Executable File
13 lines
319 B
Bash
Executable File
thread=32
|
|
n_r1=~/fastq/na12878/na12878_r1.fq
|
|
n_r2=~/fastq/na12878/na12878_r2.fq
|
|
reference=~/reference/human_g1k_v37_decoy.fasta
|
|
out=/dev/null
|
|
time /home/zzh/work/sbwa/bwa mem -t $thread -b 256 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
|
|
$reference \
|
|
$n_r1 \
|
|
$n_r2 \
|
|
-o $out
|
|
|
|
|