time ./bwa mem -t 1 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \ /home/zzh/data/reference/human_g1k_v37_decoy.fasta \ /home/zzh/data/fastq/nm1.fq \ /home/zzh/data/fastq/nm2.fq #-o /dev/null # time ./bwa mem -t 1 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \ # /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \ # /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \ # /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \ # -o /dev/null # time ./bwa mem -t 64 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \ # /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \ # /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \ # /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \ # -o /dev/null #/public/home/zzh/data/fastq/n1.fq \ #/public/home/zzh/data/fastq/n2.fq \ #/share_nas3/zyseq-release-v1.1.3/zyseq/wes/resource/reference/human_g1k_v37_decoy.fasta \ #/share_nas3/zyseq-release-v1.1.3/zyseq/data/n1.fq \ #/share_nas3/zyseq-release-v1.1.3/zyseq/data/n2.fq \ #-o reads_mapping.sam