56 Commits (dd511778374b100a98be761e698b2ba5be2bfa4b)

Author	SHA1	Message	Date
Heng Li	00e5302219	routine to get subsequence from 2-bit pac	2013-02-01 16:39:50 -05:00
Heng Li	f8f3b7577a	code cleanup; added a missing file	2013-02-01 14:38:44 -05:00
Heng Li	620ad6e5b9	reseed long SMEMs	2013-02-01 14:20:38 -05:00
Heng Li	8977737460	basic chaining working ... Definitely suboptimal in a lot of corner cases...	2013-01-31 16:26:05 -05:00
Heng Li	6c19c9640c	code backup	2013-01-31 15:55:22 -05:00
Heng Li	91debf412b	move smem iterators to bwamem.{c,h}	2013-01-31 13:59:48 -05:00