6 Commits (d668311f37acbc37c1a44c6bcae313e55bd8ee0d)

Author	SHA1	Message	Date
Heng Li	2c078eb667	option to skip ALT	2016-03-16 16:06:49 -04:00
Heng Li	d7ce7e1395	hs38D1=>hs38DH; cmd help for run-gen-ref	2014-12-23 11:48:59 -05:00
Heng Li	c05a721f28	improved doc and don't type HLA by default	2014-12-21 00:12:11 -05:00
Heng Li	d58beeee56	smarter about path finding	2014-11-19 12:38:55 -05:00
Heng Li	9ade171f7a	transfer read groups from the input BAM	2014-11-19 11:43:59 -05:00
Heng Li	15c93e7a52	renamed extras to bwakit for clarity	2014-11-19 10:37:03 -05:00