Heng Li
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08764215c6
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Merge branch 'dev'
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2016-05-31 09:43:16 -04:00 |
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Heng Li
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850dd811fc
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Release bwa-0.7.15-r1140
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2016-05-31 09:42:50 -04:00 |
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Heng Li
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bdfb9efaaa
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Merge branch 'dev'
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2016-05-20 18:06:03 -04:00 |
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Heng Li
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58bcc251f2
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r1138: fixed typo in insert size estimate (#65)
credit to @sjackman
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2016-05-20 18:05:15 -04:00 |
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Heng Li
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ee730f3832
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Merge branch 'dev'
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2016-05-04 14:41:53 -04:00 |
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Heng Li
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5db0c362f5
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Release 0.7.14-r1136
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2016-05-04 14:41:37 -04:00 |
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Heng Li
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fe545f6ad5
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Merge branch 'dev'
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2016-05-03 11:29:43 -04:00 |
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Heng Li
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7ec3261877
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r1134: use AH:* instead of AH:Y
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2016-05-03 11:28:58 -04:00 |
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Heng Li
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6b9be61666
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Merge branch 'master' of github.com:lh3/bwa
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2016-04-28 15:40:57 -04:00 |
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Heng Li
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d668311f37
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Merge branch 'dev'
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2016-04-28 15:39:58 -04:00 |
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Heng Li
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3c038250f9
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r1130: changed "ah" to "AH"
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2016-04-28 15:39:18 -04:00 |
Jason Gilliland
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d6636daead
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Include in man page info on read types
Previously this info had only been present in the help text emitted from
`bwa mem` without arguments, but I think it helpful to include in man page.
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2016-03-31 12:40:09 -04:00 |
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Jason Gilliland
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e10fc577e1
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Fix a few typos in man page
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2016-03-31 12:40:03 -04:00 |
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Heng Li
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bb7533e32c
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Merge pull request #55 from jdagilliland/master
Minor doc fix
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2016-03-17 12:15:12 -04:00 |
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Jason Gilliland
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6460ef5572
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Minor doc fix
MAN page described `bwa mem` option `-D` variously as integer and float,
when it is in fact a float.
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2016-03-17 12:00:47 -04:00 |
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Heng Li
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2c078eb667
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option to skip ALT
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2016-03-16 16:06:49 -04:00 |
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Heng Li
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83662032a2
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Merge branch 'dev'
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2016-02-23 11:24:40 -05:00 |
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Heng Li
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9e5852c540
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Released bwa-0.7.13 (r1126)
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2016-02-23 11:24:19 -05:00 |
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Heng Li
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67aa1ca731
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Merge branch 'dev'
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2016-02-23 11:17:21 -05:00 |
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Heng Li
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b94a78adbf
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use /usr/env/perl
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2016-02-23 11:08:43 -05:00 |
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Heng Li
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f1ce529cd9
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added comment
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2016-02-23 11:08:11 -05:00 |
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Heng Li
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11437a14f4
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Port #48 to the dev branch
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2016-02-23 11:07:27 -05:00 |
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Heng Li
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5ecdc66e46
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Merge branch 'master' of github.com:lh3/bwa
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2016-02-23 11:05:47 -05:00 |
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Heng Li
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f9a7869079
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Merge pull request #48 from srl147/master
ensure bwa_sa2pos does not return without setting strand
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2016-02-23 11:05:35 -05:00 |
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Heng Li
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4820d8fc32
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Merge branch 'dev'
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2016-02-23 10:40:26 -05:00 |
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Heng Li
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9a828344ec
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moved indexing to libbwa
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2016-02-13 18:48:46 -05:00 |
Steven Leonard
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099c24f5fc
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fix assertion failure report on bio-bwa-help mailing list
bwase.c:180: bwa_refine_gapped_core: Assertion `re - rb == rlen' failed
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2016-02-11 14:00:18 +00:00 |
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Heng Li
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cc9eef2d33
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Merge branch 'dev'
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2016-02-01 11:57:56 -05:00 |
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Heng Li
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86170ffd2f
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r1102: resumed versioning
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2016-02-01 11:57:14 -05:00 |
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Heng Li
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25097a9a88
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Merge branch 'dev'
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2016-02-01 11:52:02 -05:00 |
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Heng Li
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ede7b092a2
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updated GRCh38 download link
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2016-02-01 11:50:25 -05:00 |
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Heng Li
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1e6a10ce2d
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a typo in fastmap command-line prompt
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2016-02-01 11:41:46 -05:00 |
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Heng Li
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6f0ea0b7e3
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use /usr/bin/env perl
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2016-02-01 11:39:50 -05:00 |
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Heng Li
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fdf47000e7
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integer overflow on indexing
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2016-01-26 23:21:23 -05:00 |
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Heng Li
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c819643412
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make kthread.c compiled with g++
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2016-01-26 22:49:28 -05:00 |
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Heng Li
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1247dc2346
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removed the pbread mode
It is not working well. Not at all.
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2016-01-26 22:37:01 -05:00 |
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Heng Li
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616a53491d
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Merge branch 'dev' of github.com:lh3/bwa into dev
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2016-01-26 17:19:16 -05:00 |
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Heng Li
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feeb41f42d
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updated dependencies
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2016-01-26 13:54:47 -05:00 |
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Heng Li
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be2020c4af
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ropebwt2 for bwt construction
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2016-01-26 13:46:08 -05:00 |
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Heng Li
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1b2e9a6d89
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Merge pull request #51 from sethbrin/master
update the usage of main_fastmap
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2016-01-21 14:10:32 -05:00 |
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Heng Li
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1ec736e06a
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Merge pull request #50 from mgymrek/patch-1
Editing URL for b38 download
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2016-01-20 09:58:59 -05:00 |
zengping
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176a7ec67e
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update the usage of main_fastmap
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2016-01-20 22:52:25 +08:00 |
Melissa Gymrek
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9be943cec0
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Editing URL for b38 download
The previous link appears to no longer exist.
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2016-01-17 10:58:02 -05:00 |
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Steven Leonard
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f9ce2a6c73
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fix a bug where bwa_sa2pos could return without setting strand
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2015-12-11 09:29:27 +00:00 |
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Heng Li
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e3ea2a8222
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Merge pull request #47 from mfcovington/feature/fix-maxk-error
Include 'unistd.h' to explicitly declare 'getopt'
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2015-11-14 20:47:22 -05:00 |
Mike Covington
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c2efebefa7
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Include 'unistd.h' to explicitly declare 'getopt'
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2015-11-14 17:27:57 -08:00 |
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Heng Li
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0911122749
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Merge branch 'master' of github.com:lh3/bwa
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2015-08-27 10:44:55 -04:00 |
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Heng Li
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e8d531189f
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Merge branch 'dev'
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2015-08-27 10:44:34 -04:00 |
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Heng Li
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6c668d3e1a
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fixed a bug in reverse-complement
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2015-08-27 10:44:08 -04:00 |
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Heng Li
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9812521922
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Merge pull request #43 from wookietreiber/perl-shebangs
use more portable /usr/bin/env perl for scripts
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2015-07-02 11:52:40 -04:00 |