f122fad562
minor code clean up
...
bwtio.c is merged to bwt.c
2013-02-22 17:09:40 -05:00
abc675f278
typo in comments
2013-02-01 13:14:16 -05:00
86f2e134ba
no effective changes
2013-02-01 12:57:48 -05:00
91debf412b
move smem iterators to bwamem.{c,h}
2013-01-31 13:59:48 -05:00
5a4a0c4173
a bit refactoring for further changes
2013-01-31 12:34:05 -05:00
6de74888fd
bugfix: min_intv not working in SMEM
2013-01-31 12:12:58 -05:00
543c719a54
fixed a couple of unimportant bugs in SMEM
2013-01-31 11:53:07 -05:00
6641788d38
preparation for further changes
2013-01-31 11:42:31 -05:00
84d34e1d0b
Do not inline functions used externally
...
Compiling using CLANG gives the following errors:
Undefined symbols for architecture x86_64:
"_bwt_occ", referenced from:
_bwt_cal_sa in bwt.o
_bwt_sa in bwt.o
"_bwt_2occ", referenced from:
_bwt_match_exact in bwt.o
_bwt_match_exact_alt in bwt.o
_bwt_cal_width in bwtaln.o
"_bwt_2occ4", referenced from:
_bwt_match_gap in bwtgap.o
_bsw2_core in bwtsw2_core.o
"_bwtl_2occ4", referenced from:
_bsw2_core in bwtsw2_core.o
2012-06-25 12:48:43 -07:00
150bfbdef4
fixed a deadlock; SMEM iterator
2011-11-24 19:15:14 -05:00
eeedda105d
perhaps improves samse/sampe
2011-11-24 01:22:02 -05:00
4083fe9413
fixed a typo
2011-11-02 09:03:05 -04:00
673ae4aaf8
throw an error if insufficient memory during index
2011-10-31 13:26:24 -04:00
f56edd07dd
forward-backward search seems working
2011-10-25 12:31:36 -04:00
7626595e3a
backup the current debugging code; more changes
2011-10-25 10:03:57 -04:00
22c2252e15
added bidirectional bwt; seems buggy
2011-10-25 00:22:28 -04:00
b7e8c4c5aa
fixed a bug in 2occ4()
2011-10-20 11:23:23 -04:00
c948c647a0
make changes to bwt.c
2011-10-19 17:42:42 -04:00
007c3eb75d
Imported from my local bwa repository, the master repository.
2011-01-13 20:52:12 -05:00
Heng Li
Shaun Jackman
Heng Li