4 Commits (c29b176cb6412fc9b2f6fafaa11e7bd4606334ff)

Author	SHA1	Message	Date
Heng Li	8f0d439913	prepare to replace the SAM printing code ... This move is dangerous as SAM printing is very complex, but it will benefit in the long run. The planned change will reduce the redundancy, improves clarity and most importantly makes it much easier to output multiple primary hits in an optional tag.	2013-03-11 21:25:17 -04:00
Heng Li	99907c98fb	separated and improved SAM printing code ... This is for the PE mode. The routines may also be useful for bwa-sw, but probably I won't change the old code.	2013-02-11 15:29:03 -05:00
Heng Li	1fd51fc3f7	code backup	2013-02-07 14:36:18 -05:00
Heng Li	007c3eb75d	Imported from my local bwa repository, the master repository.	2011-01-13 20:52:12 -05:00