 zzh
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9c9502d584
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clean代码，结果正确
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2024-07-26 04:15:55 +08:00 |
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zzh
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7d085962a2
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开始改成sbwa那种batch模式
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2024-03-07 18:23:21 +08:00 |
zzh
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4bd0fd4f91
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做了一些代码清理，目前结果应该是完全一致的
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2024-02-22 01:26:57 +08:00 |
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zzh
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17618ee5f2
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解决了sa的bug，现在结果和原版一模一样
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2024-02-21 15:21:56 +08:00 |
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zzh
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fc2e0d9b0b
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实现了seed过程的所有加速想法，seed部分实现了3倍左右加速比
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2024-02-20 01:12:02 +08:00 |
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zzh
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bf678f4dae
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实现了用33bit表示sa，间隔为4，释放内存的时候会崩溃
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2023-12-27 10:42:12 +08:00 |
Heng Li
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02a9add042
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added MIT license to some non-GPL source files
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2020-07-01 23:02:01 -04:00 |
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Heng Li
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60b728487a
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r941: set a min length for 3rd-round seeding
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2014-10-21 13:15:42 -04:00 |
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Heng Li
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038af2a551
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r929: added simplified LAST-like seeding
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2014-10-20 17:00:31 -04:00 |
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Heng Li
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b5cba257c1
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r809: new strategy for the -a mode
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2014-08-25 11:59:27 -04:00 |
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Heng Li
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1bba5ef20e
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r807: allow to change block size in bwt_gen
For a very large reference genome, the default is too small.
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2014-08-25 10:31:54 -04:00 |
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Heng Li
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8ede4ffbfa
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Fixed clang compiling warnings
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2014-03-16 15:18:22 -04:00 |
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Heng Li
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5370bb23a3
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Updated NEWS; added stddef.h for size_t
I thought size_t is defined in stdlib.h, but it is not always.
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2013-03-08 14:14:42 -05:00 |
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Heng Li
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80e1137a6c
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move bwt_invPsi() from bwt.h to bwt.c
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2013-02-26 11:57:36 -05:00 |
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Heng Li
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174fe0f1d5
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code backup: less dependent on gcc optimization
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2013-02-26 11:14:19 -05:00 |
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Heng Li
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a19ab654df
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no effective change
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2013-02-23 14:21:19 -05:00 |
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Heng Li
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dd85c528d6
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an alternative bwt_invPsi() implementation
Cleaner, but not necessarily faster.
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2013-02-23 13:59:18 -05:00 |
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Heng Li
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91debf412b
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move smem iterators to bwamem.{c,h}
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2013-01-31 13:59:48 -05:00 |
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Heng Li
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5a4a0c4173
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a bit refactoring for further changes
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2013-01-31 12:34:05 -05:00 |
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Heng Li
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6641788d38
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preparation for further changes
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2013-01-31 11:42:31 -05:00 |
Heng Li
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150bfbdef4
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fixed a deadlock; SMEM iterator
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2011-11-24 19:15:14 -05:00 |
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Heng Li
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f56edd07dd
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forward-backward search seems working
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2011-10-25 12:31:36 -04:00 |
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Heng Li
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22c2252e15
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added bidirectional bwt; seems buggy
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2011-10-25 00:22:28 -04:00 |
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Heng Li
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c948c647a0
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make changes to bwt.c
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2011-10-19 17:42:42 -04:00 |
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Heng Li
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007c3eb75d
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Imported from my local bwa repository, the master repository.
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2011-01-13 20:52:12 -05:00 |