fast-bwa

Author	SHA1	Message	Date
John Marshall	af87825525	Replace u_int32_t by the more common uint32_t The u_int32_t type comes from <sys/types.h>, which is often included as a byproduct of other headers on glibc platforms, but not on FreeBSD or Alpine Linux. Use <stdint.h>'s uint32_t instead, which is used elsewhere in bwa source code.	2017-04-25 13:51:52 +01:00
Heng Li	599e840779	r397: multi changes/bugfixes to bwa-backtrack 1. Check .sai versioning 2. Keep track of #ins and #del during backtrack 3. Use info above to get accurate aligned regions; don't call SW extension any more 4. Identify alignment crossing the for-rev boundary 5. Fixed a bug in printing the XA tag: ungapped alignments missing	2013-05-24 16:28:18 -04:00
Heng Li	a1abfe9977	API: aln seems working	2012-04-07 00:23:01 -04:00
Heng Li	2d2db5d50f	aln seems working	2011-10-20 16:13:35 -04:00
Heng Li	007c3eb75d	Imported from my local bwa repository, the master repository.	2011-01-13 20:52:12 -05:00